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...acccatgagcgtttcaacgtttcgtcgttttaataaccatggaaatgattgctgtgtgtttatgggtttacactctcttttgactggttttattttatagGGTGTTCAACCACTTCTTGATGGCGTGCTGGATTATCTACCGTGCCCGTTGGAGGTTTATAACTACGCCCTTGATCAAAACAAATCTGAAGAGAAG
species | Zea mays |
transcript | GRMZM2G056393_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGGCACGGAAGTTCATACCAGTATACATGGGAAGTGCATTCAAAAATAAG GGTGTTCAACCACTTCTTGATGGCGTGCTGGATTATCTACCGTGCCCGTTGEST: gi|67019503|gb|CO448252.1|CO448252
genomic: TGGCACGGAAGTTCATACCAGTATACATGGGAAGTGCATTCAAAAATAAGgttcgtggct ... tattttatagGGTGTTCAACCACTTCTTGATGGCGTGCTGGATTATCTACCGTGCCCGTTG
EST: TGGCACGGAGGTTCATACCAGTATACATGGGAAGTGCATTCAAAAATAAG GGTGTTCAACCACTTCTTGATGGCGTGCTGGATTATCTACCGTGCCCGTTGEST: gi|19436218|gb|BM952628.1|BM952628
genomic: TGGCACGGAAGTTCATACCAGTATACATGGGAAGTGCATTCAAAAATAAGgttcgtggct ... tattttatagGGTGTTCAACCACTTCTTGATGGCGTGCTGGATTATCTACCGTGCCCGTTG
EST: TGGCACGGAAGTTCATACCAGTATACATGGGAAGTGCATTCAAAAATAAG GGTGTTCAACCACTTCTTGATGGCGTGCTGGATTATCTACCEST: gi|19351127|gb|BM895659.1|BM895659
genomic: TGGCACGGAAGTTCATACCAGTATACATGGGAAGTGCATTCAAAAATAAGgttcgtggct ... tattttatagGGTGTTCAACCACTTCTTGATGGCGTGCTGGATTATCTACC
EST: TGGCACGGAAGTTCATACCAGTATACATGGGAAGTGCATTCAAAAATAAG GGTGTTCAACCAEST: gi|32931849|gb|CF036661.1|CF036661
genomic: TGGCACGGAAGTTCATACCAGTATACATGGGAAGTGCATTCAAAAATAAGgttcgtggct ... tattttatagGGTGTTCAACCA
EST: TGGCACAGAAGTTCATACCAGTATACATGGGAAGTGCATTCAAAAATAAG GGTGTTCAACCACTTCTTGATGGCGTGCTGGATTATCTACCGTGCCCGTTGEST: gi|87154041|gb|DY398830.1|DY398830
genomic: TGGCACGGAAGTTCATACCAGTATACATGGGAAGTGCATTCAAAAATAAGgttcgtggct ... tattttatagGGTGTTCAACCACTTCTTGATGGCGTGCTGGATTATCTACCGTGCCCGTTG
EST: TGGCACGGAAGTTCATACCAGTATACATGGGAAGTGCATTCAAAAATAAG GGTGTTCAACCACTTCTTGATGGCGTGCTGGATTATCTACCGTGCCCGTTGEST: gi|118406757|gb|EH038205.1|EH038205
genomic: TGGCACGGAAGTTCATACCAGTATACATGGGAAGTGCATTCAAAAATAAGgttcgtggct ... tattttatagGGTGTTCAACCACTTCTTGATGGCGTGCTGGATTATCTACCGTGCCCGTTG
EST: TGGCACGGAAGTTCATACCAGTATACATGGGAAGTGCATTCAAAAATAAG GGTGTTCAACCACTTCTTGATGGCGTGCTGGATTATCTACCGTGCCCGTTG
genomic: TGGCACGGAAGTTCATACCAGTATACATGGGAAGTGCATTCAAAAATAAGgttcgtggct ... tattttatagGGTGTTCAACCACTTCTTGATGGCGTGCTGGATTATCTACCGTGCCCGTTG
tgattgctgtgtgtttatgggtttacactctcttttgactggttttattttatagGGTGTTCAACCACTTCTTGATGGCGTGCTGGATTATCTACCGTGCCCGTTGGAGGTTTATAACTACGCCCTTGATCAAAACAAATCTGAAGAGAAG
ttttgac putative branch site (score: 110)
ttttatttt putative PPT
tggttttattttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acccatgagcgtttcaacgtttcgtcgttttaataaccatggaaatgattgctgtgtgtttatgggtttacactctcttttgactggttttattttatagGGTGTTCAACCACTTCTTGATGGCGTGCTGGATTATCTACCGTGCCCGTTGGAGGTTTATAACTACGCCCTTGATCAAAACAAATCTGAAGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- -catgagc
- - - - - - - - - - - - - - - - - - -catggaa
- - - - - - - - - - - - - - - - - - - - - - - -attgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgttt