1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tggtggtggggactaatggggcttggtctcactgtcagtatttgatcatcaaatacaattaggttaattactatgttgacatcgaatcttgatgatatagGATGCATCATCATTTTGGGAGCAACAACCATTATCAGCTAGAGGATATGCATCAAGTACAATTATCCCTGCGTGCCATACTGTGGTAGACATGTCTACGA
species | Zea mays |
transcript | GRMZM2G055917_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTCGAACAGAGCTGGAGTGCATTTACAGTGCTCTTCAGCGGGCTAATATG GATGCATCATCATTTTGGGAGCAACAACCATTATCAGCTAGAGGATATGCAEST: gi|211028059|gb|FL201183.1|FL201183
genomic: GTCGAACAGAGCTGGAGTGCATTTACAGTGCTCTTCAGCGGGCTAATATGgttagctagc ... gatgatatagGATGCATCATCATTTTGGGAGCAACAACCATTATCAGCTAGAGGATATGCA
EST: GTCGAACAGAGCTGGAGTGCATTTACAGTGCTCTTCAGCGGGCTAATATG GATGCATCATCATTTTGGGAGCAACAACCATTATCAGCTAGAGGATATGCAEST: gi|78112547|gb|DV530941.1|DV530941
genomic: GTCGAACAGAGCTGGAGTGCATTTACAGTGCTCTTCAGCGGGCTAATATGgttagctagc ... gatgatatagGATGCATCATCATTTTGGGAGCAACAACCATTATCAGCTAGAGGATATGCA
EST: GTCGAACAGAGCTGGAGTGCATTTACAGTGCTCTTCAGCGGGCTAATATG GATGCATCATCATTTTGGGAGCAACAACCATTATCAGCTAGAGGATATGCAEST: gi|211028057|gb|FL201181.1|FL201181
genomic: GTCGAACAGAGCTGGAGTGCATTTACAGTGCTCTTCAGCGGGCTAATATGgttagctagc ... gatgatatagGATGCATCATCATTTTGGGAGCAACAACCATTATCAGCTAGAGGATATGCA
EST: TCGAACAGAGCTGGAGTGCATTTTACAGTGCTCTTCAGCGGGCTAATATG GATGCATCATCATTTTGGGAGCEST: gi|32938553|gb|CF043372.1|CF043372
genomic: TCGAACAGAGCTGGAGTGCATTT-ACAGTGCTCTTCAGCGGGCTAATATGgttagctagc ... gatgatatagGATGCATCATCATTTTGGGAGC
EST: GTCGAACAGAGCTGGAGTGCATTTACAGTGCTCTTCAGCGGGCTAATATG GATGCATCATCATTTTGGGAGCAACAACCATTATCAGCTAGAGGATATGCAEST: gi|211028061|gb|FL201185.1|FL201185
genomic: GTCGAACAGAGCTGGAGTGCATTTACAGTGCTCTTCAGCGGGCTAATATGgttagctagc ... gatgatatagGATGCATCATCATTTTGGGAGCAACAACCATTATCAGCTAGAGGATATGCA
EST: GTCGAACAGAGCTGGAGTGCATTTACAGTGCTCTTCAGCGGGCTAATATG GATGCATCATCATTTTGGGAGCAACAACCATTATCAGCTAGAGGATATGCA
genomic: GTCGAACAGAGCTGGAGTGCATTTACAGTGCTCTTCAGCGGGCTAATATGgttagctagc ... gatgatatagGATGCATCATCATTTTGGGAGCAACAACCATTATCAGCTAGAGGATATGCA
tcatcaaatacaattaggttaattactatgttgacatcgaatcttgatgatatagGATGCATCATCATTTTGGGAGCAACAACCATTATCAGCTAGAGGATATGCATCAAGTACAATTATCCCTGCGTGCCATACTGTGGTAGACATGTCTACGA
aattaggttaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggtggtggggactaatggggcttggtctcactgtcagtatttgatcatcaaatacaattaggttaattactatgttgacatcgaatcttgatgatatagGATGCATCATCATTTTGGGAGCAACAACCATTATCAGCTAGAGGATATGCATCAAGTACAATTATCCCTGCGTGCCATACTGTGGTAGACATGTCTACGA
-ggtggtg
- - - - - - - - - gggcttg
- - - - - - - - - - - - - - - - - - - - - - - catcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgttga