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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtacctctagggaaaaaatacaggttttcatatcatgctatctcggcaagtctacctaaattatatgctggattcagGTCCTCTGTGTTCATGGCGGTCTTTCTCCTGATGTACGTACTATTGATCAG

Basic information

species Zea mays
transcript GRMZM2G055905_T03
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G055905_T03 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g49690.1 (Oryza sativa), 3'ss of exon 5
gtaagtacctctagggaaaaaatacaggttttcatatcatgctatctcggcaagtctacc--taaattatatgctgg--attcagGTCCTCTGTGTTCATGGCGGTCTTTCTCCTGATGTACGTACTATTGATCAG
||||||   | |  ||| |   |  | ||| ||   | ||  | | |  || |    | |   |||  |||||||    || ||||| || ||||||||||| || |||||||||||||| || ||| ||||||||
gtaagtttgttt--ggacattttgtaagttgtcggtttataatttttgtgccaaataatcatcaaaccatatgctaaaaatccagGTTCTTTGTGTTCATGGTGGACTTTCTCCTGATGTGCGCACTGTTGATCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110223273|gb|EC905171.1|EC905171
EST:     GCACTGATGTTTTTGATTACCTTACGCTATCAGCAATCATTAATGGTCAA                         GTCCTCTGTGTTCATGGCGGTCTTTCTCCTGATGTACGTACTATTGATCAG
genomic: GCACTGATGTTTTTGATTACCTTACGCTATCAGCAATCATTAATGGTCAAgtaagtacct ... ctggattcagGTCCTCTGTGTTCATGGCGGTCTTTCTCCTGATGTACGTACTATTGATCAG
EST: gi|5871474|gb|AW017945.1|AW017945
EST:     GCACTGATGTTTTTGATTACCTTACGCTATCAGCAATCATTAATGGTCAA                         GTCCTCTGTGTTCATGGCGGTCTTTCTCCTGATGTACGTACTATTGATCAG
genomic: GCACTGATGTTTTTGATTACCTTACGCTATCAGCAATCATTAATGGTCAAgtaagtacct ... ctggattcagGTCCTCTGTGTTCATGGCGGTCTTTCTCCTGATGTACGTACTATTGATCAG
EST: gi|76019063|gb|DT946233.1|DT946233
EST:     TACGCTATCAGCAATCATTAATGGTCAA                         GTCCTCTGTGTTCATGGCGGTCTTTCTCCTGATGTACGTACTATTGATCAG
genomic: TACGCTATCAGCAATCATTAATGGTCAAgtaagtacct ... ctggattcagGTCCTCTGTGTTCATGGCGGTCTTTCTCCTGATGTACGTACTATTGATCAG
EST: gi|38568907|gb|CF974792.1|CF974792
EST:     GCACTGATGTTTTTGATTACCTTACGCTATCAGCAATCATTAATGGTCAA                         GTCCTCTGTGTTCATGGCGGTCTTTCTCCTGATGTACGTACTATTGATCAG
genomic: GCACTGATGTTTTTGATTACCTTACGCTATCAGCAATCATTAATGGTCAAgtaagtacct ... ctggattcagGTCCTCTGTGTTCATGGCGGTCTTTCTCCTGATGTACGTACTATTGATCAG
EST: gi|76288840|gb|DV028408.1|DV028408
EST:     GCACTGATGTTTTTGATTACCTTACGCTATCAGCAATCATTAATGGTCAA                         GTCCTCTGTGTTCATGGCGGTCTTTCTCCTGATGTACGTACTATTGATCAG
genomic: GCACTGATGTTTTTGATTACCTTACGCTATCAGCAATCATTAATGGTCAAgtaagtacct ... ctggattcagGTCCTCTGTGTTCATGGCGGTCTTTCTCCTGATGTACGTACTATTGATCAG
EST: gi|211170202|gb|FL095737.1|FL095737
EST:     CACTGATGTTTTTGATTACCTTACGCTATCAGCAATCATTAATGGTCAA                         GTCCTCTGTGTTCATGGCGGTCTTTCTCCTGATGTACGTACTATTGATCAG
genomic: CACTGATGTTTTTGATTACCTTACGCTATCAGCAATCATTAATGGTCAAgtaagtacct ... ctggattcagGTCCTCTGTGTTCATGGCGGTCTTTCTCCTGATGTACGTACTATTGATCAG
EST: gi|32856737|gb|CD996418.1|CD996418
EST:     GCACTGATGTTTTTGATTACCTTACGCTATCAGCAATCATTAATGGTCAA                         GTCCTCTGTGTTCATGGCGGTCTTTCTCCTGATGTACGTACTATTGATCAG
genomic: GCACTGATGTTTTTGATTACCTTACGCTATCAGCAATCATTAATGGTCAAgtaagtacct ... ctggattcagGTCCTCTGTGTTCATGGCGGTCTTTCTCCTGATGTACGTACTATTGATCAG
EST: gi|211170203|gb|FL095738.1|FL095738
EST:     GCACTGATGTTTTTGATTACCTTACGCTATCAGCAATCATTAATGGTCAA                         GTCCTCTGTGTTCATGGCGGTCTTTCTCCTGATGTACGTACTATTGATCAG
genomic: GCACTGATGTTTTTGATTACCTTACGCTATCAGCAATCATTAATGGTCAAgtaagtacct ... ctggattcagGTCCTCTGTGTTCATGGCGGTCTTTCTCCTGATGTACGTACTATTGATCAG
EST: gi|60343653|gb|DN210626.1|DN210626
EST:     GCACTGATGTTTTTGATTACCTTACGCTATCAGCAATCATTAATGGTCAA                         GTCCTCTGTGTTCATGGCGGTCTTTCTCCTGATGTACGTACTATTGATCAG
genomic: GCACTGATGTTTTTGATTACCTTACGCTATCAGCAATCATTAATGGTCAAgtaagtacct ... ctggattcagGTCCTCTGTGTTCATGGCGGTCTTTCTCCTGATGTACGTACTATTGATCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttttcatatcatgctatctcggcaagtctacctaaattatatgctggattcagGTCCTCTGTGTTCATGGCGGTCTTTCTCCTGATGTACGTACTATTGATCAG
                               acctaaa  putative branch site (score: 3)
                              tacctaaattatat  TA-rich tract