1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtttggttctccttttattcacacttattggtctgtaaagattattttgtgttgcgacttgcaaacttggcgcagtcactgacaccatgttcctgttcatgcctataccagAGAGAAACAGATCAAAGCCATTGAAGAATCCTTTAGAGCAGCCAAGTCAAGGCCTGTTCACCAGACTAAACGTGGGATGCAAGCTGAGTGGGTTATGCCT
species | Zea mays |
transcript | GRMZM2G055520_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCGCAATGCTTTCCTAGACAATCTTAATGATAG AGAGAAACAGATCAAAGCCATTGAAGAATCCTTTAGAGCAGCCAAGTCAAGEST: gi|101389744|gb|EB816806.1|EB816806
genomic: TCGCAATGCTTTCCTAGACAATCTTAATGATAGgtttggttct ... cctataccagAGAGAAACAGATCAAAGCCATTGAAGAATCCTTTAGAGCAGCCAAGTCAAG
EST: CGGGAATCAANNNNNNNTCGCAATGCTTTCCTAGACAATCTTAATGATAG AGAGAAACAGATCAAAGCCATTGAAGAATCCTTTAGAGCAGCCAAGTCAAG
genomic: CGGGAATCAAGGGGGGGTCGCAATGCTTTCCTAGACAATCTTAATGATAGgtttggttct ... cctataccagAGAGAAACAGATCAAAGCCATTGAAGAATCCTTTAGAGCAGCCAAGTCAAG
acttgcaaacttggcgcagtcactgacaccatgttcctgttcatgcctataccagAGAGAAACAGATCAAAGCCATTGAAGAATCCTTTAGAGCAGCCAAGTCAAGGCCTGTTCACCAGACTAAACGTGGGATGCAAGCTGAGTGGGTTATGCCT
cactgac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttggttctccttttattcacacttattggtctgtaaagattattttgtgttgcgacttgcaaacttggcgcagtcactgacaccatgttcctgttcatgcctataccagAGAGAAACAGATCAAAGCCATTGAAGAATCCTTTAGAGCAGCCAAGTCAAGGCCTGTTCACCAGACTAAACGTGGGATGCAAGCTGAGTGGGTTATGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA