1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaatatcacaagaaactagactaagcttctgcttccacatccttgacacctttctggtttctgtttgctgtatgcttatgcttgtaataaagGAACACTGCAGGTGATGGGAACGCAGAACCAGCCTGGTAGGGCATGGTCGGGGAACGAAGTTTATGTAAATAATGCTTCTACTGTGAAGAGTTCCATCAT
species | Zea mays |
transcript | GRMZM2G055243_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGGCACAACAATTCGGCGTCATCCTCGTCGGACAAAAGCAAGAGAAAAAG GAACACTGCAGGTGATGGGAACGCAGAACCAGCCTGGTAGGGCATGGTCGGEST: gi|18170083|gb|BM339923.1|BM339923
genomic: TGGCACAACAATTCGGCGTCATCCTCGTCGGACAAAAGCAAGAGAAAAAGgtaatatcac ... tgtaataaagGAACACTGCAGGTGATGGGAACGCAGAACCAGCCTGGTAGGGCATGGTCGG
EST: TGGCACAACAATTCGGCGTCATCCTCGTCGGACAAAAGCAAGAGAAAAAG GAACACTGCAGGTGATGGGAACGCAGAACCAGCCTGGTAGGGCATGGTCGGEST: gi|78181001|gb|DV551374.1|DV551374
genomic: TGGCACAACAATTCGGCGTCATCCTCGTCGGACAAAAGCAAGAGAAAAAGgtaatatcac ... tgtaataaagGAACACTGCAGGTGATGGGAACGCAGAACCAGCCTGGTAGGGCATGGTCGG
EST: TGGCACAACAATTCGGCGTCATCCTCGTCGGACAAAAGCAAGAGAAAAAG GAACACTGCAGGTGATGGAAACGCAGAACCAGCCTGGTAGGGCATGGTCGGEST: gi|28984609|gb|BQ539089.2|BQ539089
genomic: TGGCACAACAATTCGGCGTCATCCTCGTCGGACAAAAGCAAGAGAAAAAGgtaatatcac ... tgtaataaagGAACACTGCAGGTGATGGGAACGCAGAACCAGCCTGGTAGGGCATGGTCGG
EST: TGGCACAACAATTCGGCGTCATCCTCGTCGGACAAAAGCAAGAGAAAAAG GAACACTGCAGGTGATGGGAACGCAGAACCAGCCTGGTAGGGCATGGTCGGEST: gi|78180766|gb|DV551139.1|DV551139
genomic: TGGCACAACAATTCGGCGTCATCCTCGTCGGACAAAAGCAAGAGAAAAAGgtaatatcac ... tgtaataaagGAACACTGCAGGTGATGGGAACGCAGAACCAGCCTGGTAGGGCATGGTCGG
EST: TGGCACAACAATTCGGCGTCATCCTCGTCGGACAAAAGCAAGAGAAAAAG GAACACTGCAGGTGATGGAAACGCAGAACCAGCCTGGTAGGGCATGGTCGGEST: gi|113703081|gb|EE680585.1|EE680585
genomic: TGGCACAACAATTCGGCGTCATCCTCGTCGGACAAAAGCAAGAGAAAAAGgtaatatcac ... tgtaataaagGAACACTGCAGGTGATGGGAACGCAGAACCAGCCTGGTAGGGCATGGTCGG
EST: TGGCACAACAATTCGGCGTCATCCTCGTCGGACAAAAGCAAGAGAAAAAG GAACACTGC-GGTGATGGGAACGCAGAACCAGCCTGGTAGGGCATGGTCGG
genomic: TGGCACAACAATTCGGCGTCATCCTCGTCGGACAAAAGCAAGAGAAAAAGgtaatatcac ... tgtaataaagGAACACTGCAGGTGATGGGAACGCAGAACCAGCCTGGTAGGGCATGGTCGG
catccttgacacctttctggtttctgtttgctgtatgcttatgcttgtaataaagGAACACTGCAGGTGATGGGAACGCAGAACCAGCCTGGTAGGGCATGGTCGGGGAACGAAGTTTATGTAAATAATGCTTCTACTGTGAAGAGTTCCATCAT
ccttgac putative branch site (score: 70)
ttgtaataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatatcacaagaaactagactaagcttctgcttccacatccttgacacctttctggtttctgtttgctgtatgcttatgcttgtaataaagGAACACTGCAGGTGATGGGAACGCAGAACCAGCCTGGTAGGGCATGGTCGGGGAACGAAGTTTATGTAAATAATGCTTCTACTGTGAAGAGTTCCATCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA