1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tttgatgcttgtactcatcacatgccacatgacctagatagaatgatagaactttatgtacaattaaaatcttgatttttttatggtgttcttgtttcagGAATCCTGTTCCCCACCAGCCGTTTCATTTTACTTCCAGGGAGTTCATCACATACTCTACTATTAGATGACAGTGGATGAGCAATCAAGATAGGATCGGC
species | Zea mays |
transcript | GRMZM2G054247_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AATGGGAGGGATACTCATGTCCGACAGATCAAGATCTACGGGCCAAGACC GAATCCTGTTCCCCACCAGCCGTTTCATTTTACTTCCAGGGAGTTCATCACEST: gi|32791611|gb|CD943847.1|CD943847
genomic: AATGGGAGGGATACTCATGTCCGACAGATCAAGATCTACGGGCCAAGACCgtaagatgga ... cttgtttcagGAATCCTGTTCCCCACCAGCCGTTTCATTTTACTTCCAGGGAGTTCATCAC
EST: GATCTACGGGCCAAGACC GAATCCTGTTCCCCACCAGCCGTTTCATTTTACTTCCAGGGAGTTCATCACEST: gi|32857021|gb|CD996702.1|CD996702
genomic: GATCTACGGGCCAAGACCgtaagatgga ... cttgtttcagGAATCCTGTTCCCCACCAGCCGTTTCATTTTACTTCCAGGGAGTTCATCAC
EST: AATGGGAGGGATACTCATGTCCGACAGATCAAGATCTACGGGCCAAGACC GAATCCTGTTCCCCACCAGCCGTTTCATTTTACTTCCAGGGAGTTCATCACEST: gi|8273087|gb|BE012181.1|BE012181
genomic: AATGGGAGGGATACTCATGTCCGACAGATCAAGATCTACGGGCCAAGACCgtaagatgga ... cttgtttcagGAATCCTGTTCCCCACCAGCCGTTTCATTTTACTTCCAGGGAGTTCATCAC
EST: AATGGGAGGGATACTCATGTCCGACAGATCAAGATCTACGGGCCAAGACC GAATCCTGTTCCCCACCAGCCGTTTCATTTTACTTCCAGGGAGTTCATCACEST: gi|76915292|gb|DV165923.1|DV165923
genomic: AATGGGAGGGATACTCATGTCCGACAGATCAAGATCTACGGGCCAAGACCgtaagatgga ... cttgtttcagGAATCCTGTTCCCCACCAGCCGTTTCATTTTACTTCCAGGGAGTTCATCAC
EST: AATGGGAGGGATACTCATGTCCGACAGATCAAGATCTACGGGCCAAGACC GAATCCTGTTCCCCACCAGCCGTTTCATTTTACTTCCCGGGAGEST: gi|22490544|gb|BU050467.1|BU050467
genomic: AATGGGAGGGATACTCATGTCCGACAGATCAAGATCTACGGGCCAAGACCgtaagatgga ... cttgtttcagGAATCCTGTTCCCCACCAGCCGTTTCATTTTACTTCCAGGGAG
EST: AATGGGAGGGATACTCATGTCCGACAGATCAAGATCTATGGGCCAAGACC GAATCCTGTTCCCCACCAGCCGTTTCATTTTACTTCCAGGGAGTTCATCACEST: gi|71297609|gb|DR784753.1|DR784753
genomic: AATGGGAGGGATACTCATGTCCGACAGATCAAGATCTACGGGCCAAGACCgtaagatgga ... cttgtttcagGAATCCTGTTCCCCACCAGCCGTTTCATTTTACTTCCAGGGAGTTCATCAC
EST: AATGGGAGGGATACTCATGTCCGACAGATCAAGATCTACGGGCCAAGACC GAATCCTGTTCCCCACCAGCCGTTTCATTTTACTTCCAGGGAGTTCATCACEST: gi|6952537|gb|AW424605.1|AW424605
genomic: AATGGGAGGGATACTCATGTCCGACAGATCAAGATCTACGGGCCAAGACCgtaagatgga ... cttgtttcagGAATCCTGTTCCCCACCAGCCGTTTCATTTTACTTCCAGGGAGTTCATCAC
EST: AATGGGAGGGATACTCATGTCCGACAGATCAAGATCTACGGGCCAAGACC GAATCCTGTTCCCCACCAGCCGTTTCATTTTACTTCCAGGGAGTTCATCACEST: gi|16379595|gb|BI993037.1|BI993037
genomic: AATGGGAGGGATACTCATGTCCGACAGATCAAGATCTACGGGCCAAGACCgtaagatgga ... cttgtttcagGAATCCTGTTCCCCACCAGCCGTTTCATTTTACTTCCAGGGAGTTCATCAC
EST: AATGGGAGGGATACTCATGTCCGACAGATCAAGATCTACGGGCCAAGACC GAATCCTGTTCCCCACCAACCGTTTCATTTTACTTCCAGGGAGTTCATCACEST: gi|91873253|gb|EB403210.1|EB403210
genomic: AATGGGAGGGATACTCATGTCCGACAGATCAAGATCTACGGGCCAAGACCgtaagatgga ... cttgtttcagGAATCCTGTTCCCCACCAGCCGTTTCATTTTACTTCCAGGGAGTTCATCAC
EST: AATGGGAGGGATACTCATGTCCGACAGATCAAGATCTACGGGCCAAGACC GAATCCTGTTNNNNNNNAGCCGTTTCATTTTACTTCCAGGGAGTTCATCACEST: gi|87153735|gb|DY398524.1|DY398524
genomic: AATGGGAGGGATACTCATGTCCGACAGATCAAGATCTACGGGCCAAGACCgtaagatgga ... cttgtttcagGAATCCTGTTCCCCACCAGCCGTTTCATTTTACTTCCAGGGAGTTCATCAC
EST: AATGGGAGGGATACTCATGTCCGACAGATCAAGATCTATGGGCCAAGACC GAATCCTGTTCCCCACCAGCCGTTTCATTTTACTTCCAGGGAGTTCATCACEST: gi|110941176|gb|EE161333.1|EE161333
genomic: AATGGGAGGGATACTCATGTCCGACAGATCAAGATCTACGGGCCAAGACCgtaagatgga ... cttgtttcagGAATCCTGTTCCCCACCAGCCGTTTCATTTTACTTCCAGGGAGTTCATCAC
EST: AATGGGAGGGATACTCATGTCCGACAGATCAAGATCTACGGGCCAAGACC GAATCCTGTTCCCCACCAGCCGTTTCATTTTACTTCCAGGGAGTTCATCACEST: gi|71427965|gb|DR809015.1|DR809015
genomic: AATGGGAGGGATACTCATGTCCGACAGATCAAGATCTACGGGCCAAGACCgtaagatgga ... cttgtttcagGAATCCTGTTCCCCACCAGCCGTTTCATTTTACTTCCAGGGAGTTCATCAC
EST: AATGGGAGGGATACTCATGTCCGACAGATCAAGATCTACGGGCCAATACC GAATCCTGTTCCCCACCAGCCGTTTCATTTTACTTCCAGGGAGTTCATCACEST: gi|32808899|gb|CD961133.1|CD961133
genomic: AATGGGAGGGATACTCATGTCCGACAGATCAAGATCTACGGGCCAAGACCgtaagatgga ... cttgtttcagGAATCCTGTTCCCCACCAGCCGTTTCATTTTACTTCCAGGGAGTTCATCAC
EST: GATCTACGGGCCAAGACC GAATCCTGTTCCCCACCAGCCGTTTCATTTTACTTCCAGGGAGTTCATCACEST: gi|32806361|gb|CD958595.1|CD958595
genomic: GATCTACGGGCCAAGACCgtaagatgga ... cttgtttcagGAATCCTGTTCCCCACCAGCCGTTTCATTTTACTTCCAGGGAGTTCATCAC
EST: GATCTACGGGCCAAGACC GAATCCTGGTTCCCCACCAGCCGTTTCATTTTACTTCCAGGGAGTTCATCAEST: gi|211368075|gb|FL362342.1|FL362342
genomic: GATCTACGGGCCAAGACCgtaagatgga ... cttgtttcagGAATCCT-GTTCCCCACCAGCCGTTTCATTTTACTTCCAGGGAGTTCATCA
EST: AATGGGAGGGATACTCATGTCCGACAGATCAAGATCTACGGGCCAAGACC GAATCCTGTTCCCCACCAGCCGTTTCATTTTACTTCCAGGGAGTTCATCACEST: gi|94476642|gb|EB705600.1|EB705600
genomic: AATGGGAGGGATACTCATGTCCGACAGATCAAGATCTACGGGCCAAGACCgtaagatgga ... cttgtttcagGAATCCTGTTCCCCACCAGCCGTTTCATTTTACTTCCAGGGAGTTCATCAC
EST: AATGGGAGGGATATTCATGTCCGACAGATCAAGATTTACGGGCCAAGACC GAATCCTGTTNNNNNNNAGCCGTTTCATTTTATTTCCAGGGAGTTCATCAC
genomic: AATGGGAGGGATACTCATGTCCGACAGATCAAGATCTACGGGCCAAGACCgtaagatgga ... cttgtttcagGAATCCTGTTCCCCACCAGCCGTTTCATTTTACTTCCAGGGAGTTCATCAC
atagaactttatgtacaattaaaatcttgatttttttatggtgttcttgtttcagGAATCCTGTTCCCCACCAGCCGTTTCATTTTACTTCCAGGGAGTTCATCACATACTCTACTATTAGATGACAGTGGATGAGCAATCAAGATAGGATCGGC
tcttgat putative branch site (score: 183)
ttcttgtttc putative PPT
actttatgtacaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgatgcttgtactcatcacatgccacatgacctagatagaatgatagaactttatgtacaattaaaatcttgatttttttatggtgttcttgtttcagGAATCCTGTTCCCCACCAGCCGTTTCATTTTACTTCCAGGGAGTTCATCACATACTCTACTATTAGATGACAGTGGATGAGCAATCAAGATAGGATCGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- tgatgct
- - - - - - - - - -acatgcc
- - - - - - - - - - - - - -catgacc