Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tactctgcttgttatgcgctggatgggtttcttgacaatgagccacagttttctgaagtttttgaaccacaacaagctaacctgtatgtttccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGACCCTCCAGAGGAAGCGTGCTAGAATCGCTGACAAGAAGAAGAGGATAAC

Basic information

species Zea mays
transcript GRMZM2G054136_T09
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G054136_T09 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 5
-----tactctgcttgttatgcgctggatgggtttcttgacaatgagccacagttttctgaagtttttgaaccacaacaagctaacctgtatgtttccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGACCCTCCAGAGGAAGCGTGCTAGAATCGCTGACAAGAAGAAGAGGATAAC
     || | |  |   |    | | |   | ||||  | |||      | |  || | |     |||   |   | | | ||||   || |  ||   | |||||||||||||| |||||||| ||||||||||| || |||||||| ||| | |||||||||||||||||||| ||||||||||||||||||||||||||  |
caccatattatattgtctgcatgtttgtcagttttcaagtcaaaa---tatatcttccaggtagctttctgct-tacctacctaatg-gtgttgttgtgttgcagGCAAGAAGGTGAGCAAGGCTCCTAAGATCCAGCGTCTTGTGACTCCCCTCACCCTCCAGAGGAAGCGTGCCAGAATCGCTGACAAGAAGAAGAGGATCGC

upper sequence: GRMZM2G054136_T09 (Zea mays), 3'ss of exon 5
lower sequence: AT4G31700.1 (Arabidopsis thaliana), 3'ss of exon 5
tactctgcttgttatgcgctggat----gggtttcttgacaatgagccacagttttctgaagtttttgaaccacaacaagctaacctgtatgtttccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGACCCTCCAGAGGAAGCGTGCTAGAATCGCTGACAAGAAGAAGAGGATAAC
          || |  | ||| |     |   |  | |    |||  |||| ||     |   | ||     | |      |   |||| ||  |  ||| |||||||| | || ||||| || |||||||||||  |||||||||| || ||||| || ||||||||| | |||||||| ||||||||||||||||  ||  |
----------gtgagacactgaacttgagaaatagtggtttctgaatcacacttgagaaataatgttttctgaaacttgtttcttctgtttggatttttgacagGCAAGGAAGTTAGCAAAGCCCCTAAGATCCAGAGGCTTGTGACCCCATTGACTCTTCAGAGGAAGAGAGCTAGAATTGCTGACAAGAAGAAGAAAATTGC

upper sequence: GRMZM2G054136_T09 (Zea mays), 3'ss of exon 5
lower sequence: AT5G10360.2 (Arabidopsis thaliana), 3'ss of exon 5
tactctgcttgttatgcgctggatgggtttcttgacaatgagccacagttttctgaagttttt--gaaccacaacaagctaacctgt-atgtttccttg-gcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGACCCTCCAGAGGAAGCGTGCTAGAATCGCTGACAAGAAGAAGAGGATAAC
             | | |   ||    |   || ||    ||  | | ||       |||| |  ||   |  |    ||||  | | | | |||| || |||||||||||||| |||||||| |||||||||||  |||||||||| || |||||||||||||||||| | |||||||| ||||||||||||||||| ||  |
----acaaacaagaagggtaagaaaattagattcacttaaagagataattgaaaactgtttatacgattgatgatttactaatatatgaggcttccatgtgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTGACTCCATTGACCCTCCAGAGGAAGAGAGCTAGAATTGCTGACAAGAAGAAGAGAATCGC

upper sequence: GRMZM2G054136_T09 (Zea mays), 3'ss of exon 5
lower sequence: AT5G10360.1 (Arabidopsis thaliana), 3'ss of exon 5
tactctgcttgttatgcgctggatgggtttcttgacaatgagccacagttttctgaagttttt--gaaccacaacaagctaacctgt-atgtttccttg-gcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGACCCTCCAGAGGAAGCGTGCTAGAATCGCTGACAAGAAGAAGAGGATAAC
                 |   ||    |   || ||    ||  | | ||       |||| |  ||   |  |    ||||  | | | | |||| || |||||||||||||| |||||||| |||||||||||  |||||||||| || |||||||||||||||||| | |||||||| ||||||||||||||||| ||  |
-----------------gtaagaaaattagattcacttaaagagataattgaaaactgtttatacgattgatgatttactaatatatgaggcttccatgtgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTGACTCCATTGACCCTCCAGAGGAAGAGAGCTAGAATTGCTGACAAGAAGAAGAGAATCGC

upper sequence: GRMZM2G054136_T09 (Zea mays), 3'ss of exon 5
lower sequence: PP1S3195_1V6.1 (Physcomitrella patens), 3'ss of exon 2
----------------tactctgcttgttatgcgctggatgggtttcttgacaatgagccacagtttt----ctgaagtttttg-----aaccacaacaagctaac--ctgtatgtttccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGACCCTCCAGAGGAAGCGTGCTAGAATCGCTGACAAGAAGAAGAGGATAAC
                |  | ||  |||  |    | |    | ||| |  |    || | | | | |    | |  |   |||     |    |      || ||  |||  ||  | |||  |||||||||||   ||||||||||| ||||||||  |||||||||| || |||||  | |||||||||||   |||| | ||   |||||||  | |  |  |
gtacagtcatggctcctgatgtgggtgtcgtat-tttgccatgcttcctttcgtgcagtcgccgatgtagagcgggggccattgttgcgaggagccctctactgacgtctgcgtgcgtgcttt-cagGCAAGAAGAGGAGCAAGGCACCGAAGATCCAGAGGCTTGTGACTCCTTTGACTTTGCAGAGGAAGCGCCGTAGAGTGGCAATCAAGAAGGCGCGTGTCGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32847444|gb|CD987125.1|CD987125
EST:     ACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: ACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|93283835|gb|EB676099.1|EB676099
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|148962310|gb|EE013140.2|EE013140
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTTCCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCCTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|60343793|gb|DN210766.1|DN210766
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|94478280|gb|EB707238.1|EB707238
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|149070313|gb|EE158713.2|EE158713
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|31664073|gb|CD573253.1|CD573253
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|91051666|gb|EB162084.1|EB162084
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|149080656|gb|EE169711.2|EE169711
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|148990836|gb|EE032253.2|EE032253
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|89760102|gb|DY688662.1|DY688662
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|148960833|gb|EE011507.2|EE011507
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|31612251|gb|CD568873.1|CD568873
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|149073784|gb|EE162097.2|EE162097
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|149082758|gb|EE171980.2|EE171980
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|33096236|gb|CF056230.1|CF056230
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|211472004|gb|FL419882.1|FL419882
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|32830128|gb|CD969806.1|CD969806
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|148952502|gb|EC898329.2|EC898329
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|31664018|gb|CD573198.1|CD573198
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|148942261|gb|EC887277.2|EC887277
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|93012018|gb|EB637538.1|EB637538
EST:     CATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: CATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|31910722|gb|CD651566.1|CD651566
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|31664584|gb|CD573517.1|CD573517
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACG
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACG
EST: gi|30087000|gb|CB885208.1|CB885208
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|31998026|gb|CD661882.1|CD661882
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCGCTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|149097804|gb|EE183728.2|EE183728
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|78084504|gb|DV512897.1|DV512897
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTCCCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGC
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|109179375|gb|EC379954.1|EC379954
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|32830072|gb|CD969750.1|CD969750
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|32866509|gb|CF006191.1|CF006191
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|32855375|gb|CD995056.1|CD995056
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCA
EST: gi|148960834|gb|EE011508.2|EE011508
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|31611864|gb|CD568486.1|CD568486
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|211271399|gb|FL400994.1|FL400994
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|22546068|gb|BU098389.1|BU098389
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|37376690|gb|CF624898.1|CF624898
EST:     TGTACGCAAGTATGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACGCCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|33094933|gb|CF054927.1|CF054927
EST:     ACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCGGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: ACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|113647481|gb|DW805189.1|DW805189
EST:     GTACGCAAGTACGTGAACACATACCGCAGGACATTTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCC
genomic: GTACGCAAGTACGTGAACACATACCGCAGGACATT-CACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCC
EST: gi|148934826|gb|EC878871.2|EC878871
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|211476408|gb|FL048977.1|FL048977
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|166449160|gb|EG322722.1|EG322722
EST:     TGTACGCAAGTATGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACGCCCTTG
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTG
EST: gi|60356713|gb|DN223686.1|DN223686
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|211513979|gb|FK949408.1|FK949408
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGGCTGGTGACACCCCTT
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGG-CTTGTGACACCC-TT
EST: gi|40303306|gb|CK347693.1|CK347693
EST:     TGTACGCAAGTATGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACGCCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|60350381|gb|DN217354.1|DN217354
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|211516339|gb|FK949427.1|FK949427
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCCTTG
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCC-TTG
EST: gi|91053617|gb|EB164035.1|EB164035
EST:     CATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: CATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|149103991|gb|EE289415.2|EE289415
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|5761952|gb|AI966925.1|AI966925
EST:     CAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: CAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|30031745|gb|CB833596.1|CB833596
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|211267522|gb|FL446283.1|FL446283
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|149089079|gb|EE178249.2|EE178249
EST:     TGTACGCAAGTACGTGAACACATACCGCANGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|76281754|gb|DV021322.1|DV021322
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|211476406|gb|FL048975.1|FL048975
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|211509257|gb|FK949381.1|FK949381
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|148962311|gb|EE013141.2|EE013141
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCCTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|149082124|gb|EE171304.2|EE171304
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|148943047|gb|EC888097.2|EC888097
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|148958989|gb|EE010516.2|EE010516
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|32866510|gb|CF006192.1|CF006192
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCA
EST: gi|149071059|gb|EE159462.2|EE159462
EST:     TGTACGCCAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCT
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCT
EST: gi|78084505|gb|DV512898.1|DV512898
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|211516330|gb|FK949418.1|FK949418
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGGCTTGTGACACCCTTG
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGG-CTTGTGACACCCTTG
EST: gi|29577181|gb|CB617293.1|CB617293
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAA
EST: gi|149082854|gb|EE172079.2|EE172079
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|78106794|gb|DV525212.1|DV525212
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|78106793|gb|DV525211.1|DV525211
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|89760104|gb|DY688663.1|DY688663
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|16137350|gb|BI894215.1|BI894215
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|148971601|gb|EE022318.2|EE022318
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1779

AAGAGGGCCTCCAAGATCAGAAAGCTGTTCAACCTTAACAAGGATGATGATGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGACCCTCCAGAGGAAGCGTGCTAGAATCGCTGACAAGAAGAAGAGGATAAC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1549

AAGAGGGCCTCCAAGATCAGAAAGCTGTTCAACCTTAACAAGGATGATGATGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGACCCTCCAGAGGAAGCGTGCTAGAATCGCTGACAAGAAGAAGAGGATAAC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1756

AAGAGGGCCTCCAAGATCAGAAAGCTGTTCAACCTTAACAAGGATGATGATGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGACCCTCCAGAGGAAGCGTGCTAGAATCGCTGACAAGAAGAAGAGGATAAC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 920

AAGAGGGCCTCCAAGATCAGAAAGCTGTTCAACCTTAACAAGGATGATGATGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGACCCTCCAGAGGAAGCGTGCTAGAATCGCTGACAAGAAGAAGAGGATAAC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagttttctgaagtttttgaaccacaacaagctaacctgtatgtttccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGACCCTCCAGAGGAAGCGTGCTAGAATCGCTGACAAGAAGAAGAGGATAAC
                             agctaac  putative branch site (score: 920)
                                         tgtttcctt  putative PPT
          aagttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tactctgcttgttatgcgctggatgggtttcttgacaatgagccacagttttctgaagtttttgaaccacaacaagctaacctgtatgtttccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGACCCTCCAGAGGAAGCGTGCTAGAATCGCTGACAAGAAGAAGAGGATAAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - -tgcttgt
- - - - - - - - - ctggatg
- - - - - - - - - - - - - -tttcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccacaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtatg