1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtactcaccagtcacgcaggctggatcacgccgcgcgccttgcttatgccatgaagaagtttgttctgacataacagtgtacgtgtgcgcgcgtgcgccgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCAAGTCGGCGTCCGGGAAGATCCTGAGGAGGGAGCTGCGCGCCAAGCTCG
species | Zea mays |
transcript | GRMZM2G054013_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|78116672|gb|DV535059.1|DV535059
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|50334551|gb|CO529677.1|CO529677
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATTTCCAAGCAG GTGGTATTTTACAAGAGGCTACCCAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|149029572|gb|EE154742.2|EE154742
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|149015120|gb|EE044882.2|EE044882
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|71444694|gb|DR825744.1|DR825744
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|76908948|gb|DV163148.1|DV163148
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|78105518|gb|DV523936.1|DV523936
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTTTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|84970122|gb|DW468472.1|DW468472
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTTTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|71436394|gb|DR817444.1|DR817444
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTTTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|110525250|gb|EE029434.1|EE029434
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATTTCCAAGCAG GTGGTATTTTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|110218616|gb|EC900514.1|EC900514
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATTTCCAAGCAG GTGGTATTTTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|71301601|gb|DR786864.1|DR786864
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|110940598|gb|EE160755.1|EE160755
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|74233818|gb|DT641732.1|DT641732
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|148929509|gb|EC875694.2|EC875694
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATTTCCAAGCAG GTGGTATTTTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|91868830|gb|EB400173.1|EB400173
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTTTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|50337464|gb|CO532590.1|CO532590
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTTTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|71758161|gb|DR956098.1|DR956098
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTTTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|91048670|gb|EB159088.1|EB159088
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|110195955|gb|EC877852.1|EC877852
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTTTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|18179985|gb|BM381195.1|BM381195
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|71419901|gb|DR804933.1|DR804933
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|78113146|gb|DV531540.1|DV531540
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|71428868|gb|DR809918.1|DR809918
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|78125600|gb|DV543984.1|DV543984
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|76019685|gb|DT946855.1|DT946855
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|78074957|gb|DV503391.1|DV503391
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|86467988|gb|DY234358.1|DY234358
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTTTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|37421492|gb|CF648446.1|CF648446
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|149108495|gb|EE189681.2|EE189681
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|76019686|gb|DT946856.1|DT946856
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|94474516|gb|EB703474.1|EB703474
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GGGGTATTTTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|78119428|gb|DV537812.1|DV537812
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|149105640|gb|EE291190.2|EE291190
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTCTACAAGAGGCTACACAAGGTGTACEST: gi|71322982|gb|DR798164.1|DR798164
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTAC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|78082796|gb|DV511189.1|DV511189
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTTTACAAGAGGCTACACAAGGTGTATTTCACCCCCTCCATCCCC
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
aagaagtttgttctgacataacagtgtacgtgtgcgcgcgtgcgccgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCAAGTCGGCGTCCGGGAAGATCCTGAGGAGGGAGCTGCGCGCCAAGCTCG
ttttc CT-rich tract
attttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactcaccagtcacgcaggctggatcacgccgcgcgccttgcttatgccatgaagaagtttgttctgacataacagtgtacgtgtgcgcgcgtgcgccgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCAAGTCGGCGTCCGGGAAGATCCTGAGGAGGGAGCTGCGCGCCAAGCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT