1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atatgccatatcttggagcactactttgttcaccattggccaattaggtttgtgtcatattgacactaaggtgccaacattctctcccatgtttctgcagAATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGGTATCACTCCGGAAGACAAGTCCAGTGATGAAGAGCTTAGCGAGGAGGAAGACGACTCCGGTGA
species | Zea mays |
transcript | GRMZM2G053764_T04 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCCAAACCAGAGGACGCTGGCATCACTCCGGAAGEST: gi|5895766|gb|AW037012.1|AW037012
genomic: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAGgtacagtggt ... gtttctgcagAATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGGTATCACTCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCCAAACCAGAGGACGCTGGCATCACTCCGGAAGEST: gi|6022600|gb|AW067412.1|AW067412
genomic: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAGgtacagtggt ... gtttctgcagAATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGGTATCACTCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAG AATATTGGGAAAAGTATGCCAAACCAGAGGACGCTGGCATCACTCCGGAAGEST: gi|5713918|gb|AI943903.1|AI943903
genomic: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAGgtacagtggt ... gtttctgcagAATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGGTATCACTCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCCAAACCAGAGGACGCTGGCATCACTCCGGAAGEST: gi|60396538|gb|DN229407.1|DN229407
genomic: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAGgtacagtggt ... gtttctgcagAATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGGTATCACTCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGGTATCACTCCGGAAGEST: gi|60355446|gb|DN222419.1|DN222419
genomic: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAGgtacagtggt ... gtttctgcagAATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGGTATCACTCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGGTATCACTCCGGAAGEST: gi|5649980|gb|AI920340.1|AI920340
genomic: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAGgtacagtggt ... gtttctgcagAATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGGTATCACTCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGGTATCACTCCGGAAGEST: gi|1337735|gb|W49441.1|W49441
genomic: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAGgtacagtggt ... gtttctgcagAATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGGTATCACTCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGGTATCACTCCGGAAGEST: gi|71328419|gb|DR800850.1|DR800850
genomic: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAGgtacagtggt ... gtttctgcagAATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGGTATCACTCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGGTATCACTCCGGAAGEST: gi|5608383|gb|AI901960.1|AI901960
genomic: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAGgtacagtggt ... gtttctgcagAATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGGTATCACTCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCCAAACCAGAGGACGCTGGCATCACTCCGGAAGEST: gi|87156694|gb|DY401483.1|DY401483
genomic: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAGgtacagtggt ... gtttctgcagAATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGGTATCACTCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCCAAACCAGAGGACGCTGGCATCACTCCGGAAGEST: gi|5895786|gb|AW037032.1|AW037032
genomic: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAGgtacagtggt ... gtttctgcagAATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGGTATCACTCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCCAAACCAGAGGACGCTGGCATCACTCCEST: gi|5917370|gb|AW054161.1|AW054161
genomic: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAGgtacagtggt ... gtttctgcagAATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGGTATCACTCC
EST: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCCAAACCAGAGGACGCTGGCATCACTCCGGAAGEST: gi|22715330|gb|BU197707.1|BU197707
genomic: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAGgtacagtggt ... gtttctgcagAATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGGTATCACTCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCCAAACCAGAGGACGCTGGCATCACTCCGGAAGEST: gi|113551844|gb|DW724990.1|DW724990
genomic: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAGgtacagtggt ... gtttctgcagAATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGGTATCACTCCGGAAG
EST: GCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAAG AATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGG
genomic: GCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAA-Ggtacagtggt ... gtttctgcagAATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGG
aggtttgtgtcatattgacactaaggtgccaacattctctcccatgtttctgcagAATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGGTATCACTCCGGAAGACAAGTCCAGTGATGAAGAGCTTAGCGAGGAGGAAGACGACTCCGGTGA
tattgac putative branch site (score: 2)
ttctctcccatgtttc putative PPT
tcatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatgccatatcttggagcactactttgttcaccattggccaattaggtttgtgtcatattgacactaaggtgccaacattctctcccatgtttctgcagAATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGGTATCACTCCGGAAGACAAGTCCAGTGATGAAGAGCTTAGCGAGGAGGAAGACGACTCCGGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
-tatgcca
- - - - - - -tggagca
- - - - - - - - - - - - - - ttcacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgcca