1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ctctcttattttccaactagttatacacattcctccctatttattcttttctttctctctcctcttttctgtctcggtgcttgttgctgcttgacctcagGGGTCCGAACCCAACCGAATACTTTTAGTTACTATCCACCATATGATCTATCCTATAACAGTGGAGATTCTACATCAAGTATTCAAAGCTTATGGATTTG
species | Zea mays |
transcript | GRMZM2G052926_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACCAAGAGCTTACCACTGACCAGAGCTCTCATGGAAGGAATTCTGATCAG GGGTCCGAACCCAACCGAATACTTTTAGTTACTATCCACCATATGATCTATEST: gi|67014377|gb|CO443126.1|CO443126
genomic: ACCAAGAGCTTACCACTGACCAGAGCTCTCATGGAAGGAATTCTGATCAGgtatgccacg ... ttgacctcagGGGTCCGAACCCAACCGAATACTTTTAGTTACTATCCACCATATGATCTAT
EST: ACCAAGAGCTTACCACTGACCAGAGCTCTCATGGAAGGAATTCTGATCAG GGGTCCGAACCCAACCGAATACTTTTAGTTACTATCCACCATATGATCTATEST: gi|31358368|gb|CD442725.1|CD442725
genomic: ACCAAGAGCTTACCACTGACCAGAGCTCTCATGGAAGGAATTCTGATCAGgtatgccacg ... ttgacctcagGGGTCCGAACCCAACCGAATACTTTTAGTTACTATCCACCATATGATCTAT
EST: ACCAAGAGCTTACCACTGACCAGAGCTCTCATGGAAGGAATGCTGATCAG GGGTCCGAACCCAACCGAATACTTTTAGTTACTATCCACCATATGATCTATEST: gi|76013333|gb|DT940503.1|DT940503
genomic: ACCAAGAGCTTACCACTGACCAGAGCTCTCATGGAAGGAATTCTGATCAGgtatgccacg ... ttgacctcagGGGTCCGAACCCAACCGAATACTTTTAGTTACTATCCACCATATGATCTAT
EST: ACCAAGAGCTTACCACTGACCAGAGCTCTCATGGAAGGAATTCTGATCAG GGGTCCGAACCCAACCGAATACTTTTAGTTACTATCCACCATATGATCTATEST: gi|78087001|gb|DV515394.1|DV515394
genomic: ACCAAGAGCTTACCACTGACCAGAGCTCTCATGGAAGGAATTCTGATCAGgtatgccacg ... ttgacctcagGGGTCCGAACCCAACCGAATACTTTTAGTTACTATCCACCATATGATCTAT
EST: ACCAAGAGCTTACCACTGACCAGAGCTCTCATGGAAGGAATTCTGATCAG GGGTCCGAACCCAACCGAATACTTTTAGTTACTATCCACCATATGATCTATEST: gi|31250253|gb|CD219277.1|CD219277
genomic: ACCAAGAGCTTACCACTGACCAGAGCTCTCATGGAAGGAATTCTGATCAGgtatgccacg ... ttgacctcagGGGTCCGAACCCAACCGAATACTTTTAGTTACTATCCACCATATGATCTAT
EST: ACCAAGAGCTTACCACTGACCAGAGCTCTCATGGAAGGAATTCTGATCAG GGGTCCGAACCCAACCGAATACTTTTAGTTACTATCCACCATATGATCTATEST: gi|78080905|gb|DV509317.1|DV509317
genomic: ACCAAGAGCTTACCACTGACCAGAGCTCTCATGGAAGGAATTCTGATCAGgtatgccacg ... ttgacctcagGGGTCCGAACCCAACCGAATACTTTTAGTTACTATCCACCATATGATCTAT
EST: ACCAAGAGCTTACCACTGACCAGAGCTCTCATGGAAGGAATTCTGATCAG GGGTCCGAACCCAACCGAATACTTTTAGTTACTATCCACCATATGATCTATEST: gi|32943654|gb|CF048473.1|CF048473
genomic: ACCAAGAGCTTACCACTGACCAGAGCTCTCATGGAAGGAATTCTGATCAGgtatgccacg ... ttgacctcagGGGTCCGAACCCAACCGAATACTTTTAGTTACTATCCACCATATGATCTAT
EST: ACCAAGAGCTTACCACTGACCAGAGCTCTCATGGAAGGAATTCTGATCAG GGGTCCGAACCCAACCGAATACTTTTAGTTACTATCCACCATATGATCTAT
genomic: ACCAAGAGCTTACCACTGACCAGAGCTCTCATGGAAGGAATTCTGATCAGgtatgccacg ... ttgacctcagGGGTCCGAACCCAACCGAATACTTTTAGTTACTATCCACCATATGATCTAT
cttttctttctctctcctcttttctgtctcggtgcttgttgctgcttgacctcagGGGTCCGAACCCAACCGAATACTTTTAGTTACTATCCACCATATGATCTATCCTATAACAGTGGAGATTCTACATCAAGTATTCAAAGCTTATGGATTTG
gcttgac putative branch site (score: 50)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctctcttattttccaactagttatacacattcctccctatttattcttttctttctctctcctcttttctgtctcggtgcttgttgctgcttgacctcagGGGTCCGAACCCAACCGAATACTTTTAGTTACTATCCACCATATGATCTATCCTATAACAGTGGAGATTCTACATCAAGTATTCAAAGCTTATGGATTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - ccaacta
- - - - - - - - - - - - -cacattc