1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...caacttacaaactttatactgcaaaacgtagcatgttcgttttttttttgctgtactttaaagttgcatattcatcctcgtcacttgtgtcttttttcagGCAATTATAGAGAGGATGGGCGAGCTTGAGAAGCTGGAATGAAAAGAAACAATGGTGTAGTGTACATTAGCAATTTAGCATAGGTCCGGAGCTAGTTCTG
species | Zea mays |
transcript | GRMZM2G052713_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TATTGGATGAGTTCATTCTTGCTGGAGAGCTTCAAGAAACAAGCAAAAGG GCAATTATAGAGAGGATGGGCGAGCTTGAGAAGCTGGAATGAAAAGAAACAEST: gi|211344140|gb|FL188310.1|FL188310
genomic: TATTGGATGAGTTCATTCTTGCTGGAGAGCTTCAAGAAACAAGCAAAAGGgtattgcttt ... cttttttcagGCAATTATAGAGAGGATGGGCGAGCTTGAGAAGCTGGAATGAAAAGAAACA
EST: TATTGGATGAGTTCATTCTTGCTGGAGAGCTTCAAGAAACAAGCAAAAGG GCAATTATAGAGAGGATGGGCGAGCTTGAGAAGCTGGAATGAAAAGAAACAEST: gi|32938017|gb|CF042836.1|CF042836
genomic: TATTGGATGAGTTCATTCTTGCTGGAGAGCTTCAAGAAACAAGCAAAAGGgtattgcttt ... cttttttcagGCAATTATAGAGAGGATGGGCGAGCTTGAGAAGCTGGAATGAAAAGAAACA
EST: TATTGGATGAGTTCATTCTTGCTGGAGAGCTTCAAGAAACAAGCAAAAGG ACAATTATAGAGAGGATGGGCGAGCTTGAGAAGCTGGAATGAAAAGAAACAEST: gi|60394275|gb|DN227145.1|DN227145
genomic: TATTGGATGAGTTCATTCTTGCTGGAGAGCTTCAAGAAACAAGCAAAAGGgtattgcttt ... cttttttcagGCAATTATAGAGAGGATGGGCGAGCTTGAGAAGCTGGAATGAAAAGAAACA
EST: TATTGGATGAGTTCATTCTTGCTGGAGAGCTTCAAGAAACAAGCAAAAGG GCAATTATAGAGAGGATGGGCGAGCTTGAGAAGCTGGAATGAAAAGAAACAEST: gi|67011386|gb|CO440135.1|CO440135
genomic: TATTGGATGAGTTCATTCTTGCTGGAGAGCTTCAAGAAACAAGCAAAAGGgtattgcttt ... cttttttcagGCAATTATAGAGAGGATGGGCGAGCTTGAGAAGCTGGAATGAAAAGAAACA
EST: TATTGGATGAGTTCATTCTTGCTGGAGAGCTTCAAGAAACAAGCAAAAGG GCAATTATAGAGAGGATGGGCGAGCTTGAGAAGCTGGAATGAAAAGAAACAEST: gi|32936019|gb|CF040831.1|CF040831
genomic: TATTGGATGAGTTCATTCTTGCTGGAGAGCTTCAAGAAACAAGCAAAAGGgtattgcttt ... cttttttcagGCAATTATAGAGAGGATGGGCGAGCTTGAGAAGCTGGAATGAAAAGAAACA
EST: TATTGGATGAGTTCATTCTTGCTGGAGAGCTTCAAGAAACAAGCAAAAGG GCAATTATAGAGAGGATGGGCGAGCTTGAGAAGCTGGAATGAAAAGAAACAEST: gi|211344136|gb|FL188306.1|FL188306
genomic: TATTGGATGAGTTCATTCTTGCTGGAGAGCTTCAAGAAACAAGCAAAAGGgtattgcttt ... cttttttcagGCAATTATAGAGAGGATGGGCGAGCTTGAGAAGCTGGAATGAAAAGAAACA
EST: TATTGGATGAGTTCATTCTTGCTGGAGAGCTTCAAGAAACAAGCAAAAGG GCAATTATAGAGAGGEST: gi|211344143|gb|FL188313.1|FL188313
genomic: TATTGGATGAGTTCATTCTTGCTGGAGAGCTTCAAGAAACAAGCAAAAGGgtattgcttt ... cttttttcagGCAATTATAGAGAGG
EST: TATTGGATGAGTTCATTCTTGCTGGAGAGCTTCAAGAAACAAGCAAAAGG GCAATTATAGAGAGGATGGGCGAGCTTEST: gi|60351820|gb|DN218793.1|DN218793
genomic: TATTGGATGAGTTCATTCTTGCTGGAGAGCTTCAAGAAACAAGCAAAAGGgtattgcttt ... cttttttcagGCAATTATAGAGAGGATGGGCGAGCTT
EST: TATTGGATGAGTTCATTCTTGCTGGAGAGCTTCAAGAAACAAGCAAAAGG GCAATTATAGAGAGGATGGGCGAGCTTGAGAAGCTGGAATGAAAAGAAACAEST: gi|60356394|gb|DN223367.1|DN223367
genomic: TATTGGATGAGTTCATTCTTGCTGGAGAGCTTCAAGAAACAAGCAAAAGGgtattgcttt ... cttttttcagGCAATTATAGAGAGGATGGGCGAGCTTGAGAAGCTGGAATGAAAAGAAACA
EST: TATTGGATGAGTTCATTCTTGCTGGAGAGCTTCAAGAAACAAGCAAAAGG GCAATTATAGAGAGGATGGGCGAGCTTGAGAAGCTGGAATGAAAAGAAACAEST: gi|211344141|gb|FL188311.1|FL188311
genomic: TATTGGATGAGTTCATTCTTGCTGGAGAGCTTCAAGAAACAAGCAAAAGGgtattgcttt ... cttttttcagGCAATTATAGAGAGGATGGGCGAGCTTGAGAAGCTGGAATGAAAAGAAACA
EST: TATTGGATGAGTTCATTCTTGCTGGAGAGCTTCAAGAAACAAGCAAAAGG GCAATTATAGAGAGGATGGGCGAGCTTGAGAAGCTGGAATGAAAAGAAACAEST: gi|211341753|gb|FL188303.1|FL188303
genomic: TATTGGATGAGTTCATTCTTGCTGGAGAGCTTCAAGAAACAAGCAAAAGGgtattgcttt ... cttttttcagGCAATTATAGAGAGGATGGGCGAGCTTGAGAAGCTGGAATGAAAAGAAACA
EST: TATTGGATGAGTTCATTCTTGCTGGAGAGCTTCAAGAAACAAGCAAAAGG GCAATTATAGAGAGGATGGGCGAGCTTGAGAAGCTGGAATGAAAAGAA-CA
genomic: TATTGGATGAGTTCATTCTTGCTGGAGAGCTTCAAGAAACAAGCAAAAGGgtattgcttt ... cttttttcagGCAATTATAGAGAGGATGGGCGAGCTTGAGAAGCTGGAATGAAAAGAAACA
ttttgctgtactttaaagttgcatattcatcctcgtcacttgtgtcttttttcagGCAATTATAGAGAGGATGGGCGAGCTTGAGAAGCTGGAATGAAAAGAAACAATGGTGTAGTGTACATTAGCAATTTAGCATAGGTCCGGAGCTAGTTCTG
cttgtgtcttttttc CT-rich tract
tactttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caacttacaaactttatactgcaaaacgtagcatgttcgttttttttttgctgtactttaaagttgcatattcatcctcgtcacttgtgtcttttttcagGCAATTATAGAGAGGATGGGCGAGCTTGAGAAGCTGGAATGAAAAGAAACAATGGTGTAGTGTACATTAGCAATTTAGCATAGGTCCGGAGCTAGTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - tactgca
- - - - - - - - - - - - - - - gcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catcctc