1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ccactccacaatcgcatcctctttgttggaagagctacttgtcttgtttctctttgcagccataaaaccttgccaattcatccatgttggggttttacagGTTGTTTATGCAAAAACAGATCTAGCTGCGGGATCAAAAGGAATAACTGCATTCATAATCGAGAAAGGGATGCCCGG
species | Zea mays |
transcript | GRMZM2G052630_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTAATGGGAATAAGATGTGGTGCACCAATGGGCCGTCTGCTCAGACGCTG GTTGTTTATGCAAAAACAGATCTAGCTGCGGGATCAAAAGGAATAACTGCAEST: gi|76936508|gb|DV174756.1|DV174756
genomic: TTAATGGGAATAAGATGTGGTGCACCAATGGGCCGTCTGCTCAGACGCTGgtatttttcc ... ggttttacagGTTGTTTATGCAAAAACAGATCTAGCTGCGGGATCAAAAGGAATAACTGCA
EST: TTAATGGGAATAAGATGTGGTGCACCAATGGGCCGTCTGCTCAGACGCTG GTTGTTTATGCAAAAACAGATCTAGCTGCGGGATCAAAAGGAATAACTGCAEST: gi|31360769|gb|CD445126.1|CD445126
genomic: TTAATGGGAATAAGATGTGGTGCACCAATGGGCCGTCTGCTCAGACGCTGgtatttttcc ... ggttttacagGTTGTTTATGCAAAAACAGATCTAGCTGCGGGATCAAAAGGAATAACTGCA
EST: TTAATGGGAATAAGATGTGGTGCACCAATGGGCCGTCTGCTCAGACGCTG GTTGTTTATGCAAAAACAGATCTAGCTGCGGGATCAAAAGGAATAACTGCAEST: gi|149079538|gb|EE168523.2|EE168523
genomic: TTAATGGGAATAAGATGTGGTGCACCAATGGGCCGTCTGCTCAGACGCTGgtatttttcc ... ggttttacagGTTGTTTATGCAAAAACAGATCTAGCTGCGGGATCAAAAGGAATAACTGCA
EST: TTAATGGGAATAAGATGTGGTGCACCAATGGGCCGTCTGCTCAGACGCTG GTTGTTTATGCAAAAACAGATCTAGCTGCGGGATCAAAAGGAATAACTGCAEST: gi|31354622|gb|CD438979.1|CD438979
genomic: TTAATGGGAATAAGATGTGGTGCACCAATGGGCCGTCTGCTCAGACGCTGgtatttttcc ... ggttttacagGTTGTTTATGCAAAAACAGATCTAGCTGCGGGATCAAAAGGAATAACTGCA
EST: TTAATGGGAATAAGATGTGGTGCACCAATGGGCCGTCTGCTCAGACGCTG GTTGTTTATGCAAAAACAGATCTAGCTGCGGGATCAAAAGGAATAACTGCAEST: gi|67030645|gb|CO459394.1|CO459394
genomic: TTAATGGGAATAAGATGTGGTGCACCAATGGGCCGTCTGCTCAGACGCTGgtatttttcc ... ggttttacagGTTGTTTATGCAAAAACAGATCTAGCTGCGGGATCAAAAGGAATAACTGCA
EST: TTAATGGGAATAAGATGTGGTGCACCAATGGGCCGTCTGCTCAGACGCTG GTTGTTTATGCAAAAACAGATCTAGCTGCGGGATCAAAAGGAATAACTGCAEST: gi|76936507|gb|DV174755.1|DV174755
genomic: TTAATGGGAATAAGATGTGGTGCACCAATGGGCCGTCTGCTCAGACGCTGgtatttttcc ... ggttttacagGTTGTTTATGCAAAAACAGATCTAGCTGCGGGATCAAAAGGAATAACTGCA
EST: GGGAATAAGATGTGGTGCACCAATGGGCCGTCTGCTCAGACGCTG GTTGTTTATGCAAAAACAGATCTAGCTGCGGGATCAAAAGGAATAACTGCAEST: gi|78105056|gb|DV523474.1|DV523474
genomic: GGGAATAAGATGTGGTGCACCAATGGGCCGTCTGCTCAGACGCTGgtatttttcc ... ggttttacagGTTGTTTATGCAAAAACAGATCTAGCTGCGGGATCAAAAGGAATAACTGCA
EST: TTAATGGGAATAAGATGTGGTGCACCAATGGGCCGTCTGCTCAGACGCTG GTTGTTTATGCAAAAACAGATCTAGCTGCGGGATCAAAAGGAATAACTGCAEST: gi|91057188|gb|EB167606.1|EB167606
genomic: TTAATGGGAATAAGATGTGGTGCACCAATGGGCCGTCTGCTCAGACGCTGgtatttttcc ... ggttttacagGTTGTTTATGCAAAAACAGATCTAGCTGCGGGATCAAAAGGAATAACTGCA
EST: TTAATGGGAATAAGATGTGGTGCACCAATGGGCCGTCTGCTCAGACGCTG GTTGTTTATGCAAAAACAGATCTAGCTGCGGGATCAAAAGGAATAACTGCA
genomic: TTAATGGGAATAAGATGTGGTGCACCAATGGGCCGTCTGCTCAGACGCTGgtatttttcc ... ggttttacagGTTGTTTATGCAAAAACAGATCTAGCTGCGGGATCAAAAGGAATAACTGCA
gtttctctttgcagccataaaaccttgccaattcatccatgttggggttttacagGTTGTTTATGCAAAAACAGATCTAGCTGCGGGATCAAAAGGAATAACTGCATTCATAATCGAGAAAGGGATGCCCGG
ataaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccactccacaatcgcatcctctttgttggaagagctacttgtcttgtttctctttgcagccataaaaccttgccaattcatccatgttggggttttacagGTTGTTTATGCAAAAACAGATCTAGCTGCGGGATCAAAAGGAATAACTGCATTCATAATCGAGAAAGGGATGCCCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA