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gtgctcgtcgcatccttctttagacagaaatatcgctccctacccctgtctgattatctgcattcatgtgcagAGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGA
species | Zea mays |
transcript | GRMZM2G052546_T07 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAG AGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTCEST: gi|148970824|gb|EE021591.2|EE021591
genomic: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcg ... tcatgtgcagAGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
EST: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAG AGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTCEST: gi|148967268|gb|EE018472.2|EE018472
genomic: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcg ... tcatgtgcagAGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
EST: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAG AGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTCEST: gi|15427195|gb|BI543017.1|BI543017
genomic: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcg ... tcatgtgcagAGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
EST: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAG AGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTCEST: gi|76290045|gb|DV029613.1|DV029613
genomic: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcg ... tcatgtgcagAGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
EST: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAG AGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTCEST: gi|21621474|gb|BQ619480.1|BQ619480
genomic: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcg ... tcatgtgcagAGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
EST: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAG AGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTCEST: gi|149081546|gb|EE170685.2|EE170685
genomic: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcg ... tcatgtgcagAGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
EST: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAG AGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTCEST: gi|71435430|gb|DR816480.1|DR816480
genomic: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcg ... tcatgtgcagAGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
EST: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAG AGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTCEST: gi|67023551|gb|CO452300.1|CO452300
genomic: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcg ... tcatgtgcagAGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
EST: CAATTTCTTACGCCCANACTTGATTGTAGGATCCTGCTTACAG AGTCCACCTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTCEST: gi|211478786|gb|FL377818.1|FL377818
genomic: CAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcg ... tcatgtgcagAGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
EST: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAG AGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTCEST: gi|76914764|gb|DV165677.1|DV165677
genomic: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcg ... tcatgtgcagAGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
EST: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAG AGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTCEST: gi|211266638|gb|FL405762.1|FL405762
genomic: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcg ... tcatgtgcagAGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
EST: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAG AGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTCEST: gi|74234762|gb|DT642676.1|DT642676
genomic: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcg ... tcatgtgcagAGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
EST: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAG AGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTCEST: gi|211183157|gb|FL428740.1|FL428740
genomic: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcg ... tcatgtgcagAGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
EST: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAG AGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTCEST: gi|148934585|gb|EC878634.2|EC878634
genomic: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcg ... tcatgtgcagAGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
EST: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAG AGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
genomic: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcg ... tcatgtgcagAGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
tttagacagaaatatcgctccctacccctgtctgattatctgcattcatgtgcagAGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGA
gtctgat putative branch site (score: 4)
agaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgctcgtcgcatccttctttagacagaaatatcgctccctacccctgtctgattatctgcattcatgtgcagAGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA