1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtgtgtaaatctgtgacgatgtgttttctgattcatactttctagtgcaaaactcgaactactgtccactgtatgacaaatctggtgatttacattacagAAGTGTATGCTGACCCTACTCACTCATCGTATGACGCTCTTGAATTTGCATTCGGGTTGTTCTCCACCTTTACGCCCGCG
species | Zea mays |
transcript | GRMZM2G052479_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCAAAGGCATTTTGTGAGCAAACCAAATTCAAAGGAG AAGTGTATGCTGACCCTACTCACTCATCGTATGACGCTCTTEST: gi|211373863|gb|FL386282.1|FL386282
genomic: GCAAAGGCATTTTGTGAGCAAACCAAATTCAAAGGAGgtctgtttct ... tacattacagAAGTGTATGCTGACCCTACTCACTCATCGTATGACGCTCTT
EST: GCAAAGGCATTTTGTGAGCAAACCAAATTCAAAGGAG AAGTGTATGCTGACCCTACTCACTCATCGTATGACGCCCTTG
genomic: GCAAAGGCATTTTGTGAGCAAACCAAATTCAAAGGAGgtctgtttct ... tacattacagAAGTGTATGCTGACCCTACTCACTCATCGTATGACGCTCTTG
tgcaaaactcgaactactgtccactgtatgacaaatctggtgatttacattacagAAGTGTATGCTGACCCTACTCACTCATCGTATGACGCTCTTGAATTTGCATTCGGGTTGTTCTCCACCTTTACGCCCGCG
atttacatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtaaatctgtgacgatgtgttttctgattcatactttctagtgcaaaactcgaactactgtccactgtatgacaaatctggtgatttacattacagAAGTGTATGCTGACCCTACTCACTCATCGTATGACGCTCTTGAATTTGCATTCGGGTTGTTCTCCACCTTTACGCCCGCG
- - - - - - - - - -tgtgttt
- - - - - - - - - - - - - - tgattca
- - - - - - - - - - - - - - - - - - - - -ctagtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -actactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctggtg