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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgtgtaaatctgtgacgatgtgttttctgattcatactttctagtgcaaaactcgaactactgtccactgtatgacaaatctggtgatttacattacagAAGTGTATGCTGACCCTACTCACTCATCGTATGACGCTCTTGAATTTGCATTCGGGTTGTTCTCCACCTTTACGCCCGCG

Basic information

species Zea mays
transcript GRMZM2G052479_T01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148961906|gb|EE012693.2|EE012693
EST:     GAACAGGCAAAGGCATTTTGTGAGCAAACCAAATTCAAAGGAG                         AAGTGTATGCTGACCCTACTCACTCATCGTATGACGCTCTTGAATTTGCAT
genomic: GAACAGGCAAAGGCATTTTGTGAGCAAACCAAATTCAAAGGAGgtctgtttct ... tacattacagAAGTGTATGCTGACCCTACTCACTCATCGTATGACGCTCTTGAATTTGCAT
EST: gi|94472720|gb|EB701678.1|EB701678
EST:     GCAAAGGCATTTTGTGAGCAAACCAAATTCAAAGGAG                         AAGTGTATGCTGACCCTACTCACTCATCGTATGACGCTCTTGAATTTGCAT
genomic: GCAAAGGCATTTTGTGAGCAAACCAAATTCAAAGGAGgtctgtttct ... tacattacagAAGTGTATGCTGACCCTACTCACTCATCGTATGACGCTCTTGAATTTGCAT
EST: gi|149098517|gb|EE184497.2|EE184497
EST:     GCAAAGGCATTTTGTGAGCAAACCAAATTCAAAGGAG                         AAGTGTATGCTGACCCTACTCCCTCATCGTATGACGCTCTTGAATTTGCAT
genomic: GCAAAGGCATTTTGTGAGCAAACCAAATTCAAAGGAGgtctgtttct ... tacattacagAAGTGTATGCTGACCCTACTCACTCATCGTATGACGCTCTTGAATTTGCAT
EST: gi|211321654|gb|FL407918.1|FL407918
EST:     GCAAAGGCATTTTGTGAGCAAACCAAATTCAAAGGAG                         AAGTGTATGCTGACCCTACTCACTCATCGTATGACGCTCTT
genomic: GCAAAGGCATTTTGTGAGCAAACCAAATTCAAAGGAGgtctgtttct ... tacattacagAAGTGTATGCTGACCCTACTCACTCATCGTATGACGCTCTT
EST: gi|211373863|gb|FL386282.1|FL386282
EST:     GCAAAGGCATTTTGTGAGCAAACCAAATTCAAAGGAG                         AAGTGTATGCTGACCCTACTCACTCATCGTATGACGCCCTTG
genomic: GCAAAGGCATTTTGTGAGCAAACCAAATTCAAAGGAGgtctgtttct ... tacattacagAAGTGTATGCTGACCCTACTCACTCATCGTATGACGCTCTTG
EST: gi|148938520|gb|EC882841.2|EC882841
EST:     GCAAAGGCATTTTGTGAGCAAACCAAATTCAAAGGAG                         AAGTGTATGCTGACCCTACTCACTCATCGTATGACGCTCTTGAATTTGCAT
genomic: GCAAAGGCATTTTGTGAGCAAACCAAATTCAAAGGAGgtctgtttct ... tacattacagAAGTGTATGCTGACCCTACTCACTCATCGTATGACGCTCTTGAATTTGCAT
EST: gi|101386886|gb|EB815460.1|EB815460
EST:     GCAAAGGCATTTTGTGAGCAAACCAAATTCAAAGGAG                         AAGTGTATGCTGACCCTACTCACTCATCGTATGACGCTCTTGAATTTGCAT
genomic: GCAAAGGCATTTTGTGAGCAAACCAAATTCAAAGGAGgtctgtttct ... tacattacagAAGTGTATGCTGACCCTACTCACTCATCGTATGACGCTCTTGAATTTGCAT
EST: gi|71760018|gb|DR957955.1|DR957955
EST:     GCAAAGGCATTTTGTGAGCAAACCAAATTCAAAGGAG                         AAGTGTATGCTGACCCTACTCACTCATCGTATGACGCTCTTGAATTTGCAT
genomic: GCAAAGGCATTTTGTGAGCAAACCAAATTCAAAGGAGgtctgtttct ... tacattacagAAGTGTATGCTGACCCTACTCACTCATCGTATGACGCTCTTGAATTTGCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcaaaactcgaactactgtccactgtatgacaaatctggtgatttacattacagAAGTGTATGCTGACCCTACTCACTCATCGTATGACGCTCTTGAATTTGCATTCGGGTTGTTCTCCACCTTTACGCCCGCG
                                          atttacatta  TA-rich tract