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...ctaccccaactggcttgggactaaaaggctttgttgatgttgtacctctcttcaagttctagcaaaagtttgctaagatggtgaagtgatttttttgcagGCGCATCCTGGAGGTTTTCTTTTCACAAAGTTTGCCAGTAGCAGCCAGACACTTTTTGACCTTTTCCCG
species | Zea mays |
transcript | GRMZM2G052403_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GNGTTCTTATTATAGGATCCCACACTCAGATGGACAGCCGCAAAGAAAAG GCGCATCCTGGAGGTTTTCTTTTCACAAAGTTTGCCAGTAGCAGCCAGACAEST: gi|211048842|gb|FL187602.1|FL187602
genomic: GTGTTCTTATTATAGGATCCCACACTCAGATGGACAGCCGCAAAGAAAAGgtacatgcat ... ttttttgcagGCGCATCCTGGAGGTTTTCTTTTCACAAAGTTTGCCAGTAGCAGCCAGACA
EST: GTGTTCTTATTATAGGATCCCACACTCAGATGGACAGCCGCAAAGAAAAG GCGCATCCTGGAGGTTTTCTTTTCACAAAGTTTGCCAGTAEST: gi|211048840|gb|FL187600.1|FL187600
genomic: GTGTTCTTATTATAGGATCCCACACTCAGATGGACAGCCGCAAAGAAAAGgtacatgcat ... ttttttgcagGCGCATCCTGGAGGTTTTCTTTTCACAAAGTTTGCCAGTA
EST: GTGTTCTTATTATAGGATCCCACACTCAGATGGACAGCCGCAAAGAAAAG GCGCATCCTGGAGGTTTTCTTTTCACAAAGTTTGCCAGTAGCAGCCAGACAEST: gi|211048843|gb|FL187603.1|FL187603
genomic: GTGTTCTTATTATAGGATCCCACACTCAGATGGACAGCCGCAAAGAAAAGgtacatgcat ... ttttttgcagGCGCATCCTGGAGGTTTTCTTTTCACAAAGTTTGCCAGTAGCAGCCAGACA
EST: GTGTTCTTATTATAGGATCCCACACTCAGATGGACAGCCGCAAAGAAAAG GCGCATCCTGGAGGTTTTCTTTTCACAAAGTTTGCCAGTAGCAGCCAGACAEST: gi|211051789|gb|FL187607.1|FL187607
genomic: GTGTTCTTATTATAGGATCCCACACTCAGATGGACAGCCGCAAAGAAAAGgtacatgcat ... ttttttgcagGCGCATCCTGGAGGTTTTCTTTTCACAAAGTTTGCCAGTAGCAGCCAGACA
EST: GTGTTCTTATTATAGGATCCCACACTCAGATGGACAGCCGCAAAGAAAAG GCGCATCCTGGAGGTTTTCTTTTCACAAAGTTTGCCAGTAGCAGCCAGACAEST: gi|32801048|gb|CD953284.1|CD953284
genomic: GTGTTCTTATTATAGGATCCCACACTCAGATGGACAGCCGCAAAGAAAAGgtacatgcat ... ttttttgcagGCGCATCCTGGAGGTTTTCTTTTCACAAAGTTTGCCAGTAGCAGCCAGACA
EST: GATCCCACACTCAGATGGACAGCCGCAAAGAAAAG GCGCATCCTGGAGGTTTTCTTTTCACAAAGTTTGCCAGTAGCAGCCAGACA
genomic: GATCCCACACTCAGATGGACAGCCGCAAAGAAAAGgtacatgcat ... ttttttgcagGCGCATCCTGGAGGTTTTCTTTTCACAAAGTTTGCCAGTAGCAGCCAGACA
ctctcttcaagttctagcaaaagtttgctaagatggtgaagtgatttttttgcagGCGCATCCTGGAGGTTTTCTTTTCACAAAGTTTGCCAGTAGCAGCCAGACACTTTTTGACCTTTTCCCG
tttttttgc CT-rich tract
tgattttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaccccaactggcttgggactaaaaggctttgttgatgttgtacctctcttcaagttctagcaaaagtttgctaagatggtgaagtgatttttttgcagGCGCATCCTGGAGGTTTTCTTTTCACAAAGTTTGCCAGTAGCAGCCAGACACTTTTTGACCTTTTCCCG
- - - - - - - - - - - - - - - -tgttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatggtg