1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtagtgttttgcttttgggaaatgcctttcttgatgcagtactgtcttcctttgtgacttatggtattacgcatgtcggtgttccagGTTTCATTGTGCAACTGCGAAGCTTAGAGGATCACTCCCCACTTCCTGGTGTTACCCTCGGTGATATTGGTGGAAAGTTCGGTAGTGGTGCATATAACAG
species | Zea mays |
transcript | GRMZM2G052389_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGTGGTGTACGCTCGGTTGATAACTGAAGGAAAGGACTATGGCATACATG GTTTCATTGTGCAACTGCGAAGCTTAGAGGATCACTCCCCACTTCCTGGTGEST: gi|71429539|gb|DR810589.1|DR810589
genomic: AGTGGTGTACGCTCGGTTGATAACTGAAGGAAAGGACTATGGCATACATGgtagtgtttt ... ggtgttccagGTTTCATTGTGCAACTGCGAAGCTTAGAGGATCACTCCCCACTTCCTGGTG
EST: AGTGGTGTACGCTCGGTTGATAACTGAAGGAAAGGACTATGGCATACATG GTTTCATTGTGCAACTGCGAAGCTTAGAGGATCACTCCCCACTTCCTGGTGEST: gi|148931792|gb|EC875082.2|EC875082
genomic: AGTGGTGTACGCTCGGTTGATAACTGAAGGAAAGGACTATGGCATACATGgtagtgtttt ... ggtgttccagGTTTCATTGTGCAACTGCGAAGCTTAGAGGATCACTCCCCACTTCCTGGTG
EST: AGTGGTGTACGCTCGGTTGATAACTGAAGGAAAGGACTATGGCATACATG GTTTCATTGTGCAACTGCGAAGCTTAGAGGATCACTCCCCACTTCCTGGTGEST: gi|71438259|gb|DR819309.1|DR819309
genomic: AGTGGTGTACGCTCGGTTGATAACTGAAGGAAAGGACTATGGCATACATGgtagtgtttt ... ggtgttccagGTTTCATTGTGCAACTGCGAAGCTTAGAGGATCACTCCCCACTTCCTGGTG
EST: AGTGGTGTACGCTCGGTTGATAACTGAAGGAAAGGACTATGGCATACATG GTTTCATTGTGCAACTGCGAAGCTTAGAGGATCACTCCCCACTTCCTGGTGEST: gi|71435701|gb|DR816751.1|DR816751
genomic: AGTGGTGTACGCTCGGTTGATAACTGAAGGAAAGGACTATGGCATACATGgtagtgtttt ... ggtgttccagGTTTCATTGTGCAACTGCGAAGCTTAGAGGATCACTCCCCACTTCCTGGTG
EST: AGTGGTGTACGCTCGGTTGATAACTGAAGGAAAGGACTATGGCATACATG GTTTCATTGTGCAACTGCCAAGCTTAGAGGATCACTCCCCACTTCCTGGTGEST: gi|211132739|gb|FL016687.1|FL016687
genomic: AGTGGTGTACGCTCGGTTGATAACTGAAGGAAAGGACTATGGCATACATGgtagtgtttt ... ggtgttccagGTTTCATTGTGCAACTGCGAAGCTTAGAGGATCACTCCCCACTTCCTGGTG
EST: AGTGGTGTACGCTCGGTTGATAACTGAAGGAAAGGACTATGGCATACATG GGTTTCATTGTGCAACTGCGAAGCTTAGAGGATCACTCC
genomic: AGTGGTGTACGCTCGGTTGATAACTGAAGGAAAGGACTATGGCATACATGgtagtgtttt ... ggtgttccagG-TTTCATTGTGCAACTGCGAAGCTTAGAGGATCACTCC
gatgcagtactgtcttcctttgtgacttatggtattacgcatgtcggtgttccagGTTTCATTGTGCAACTGCGAAGCTTAGAGGATCACTCCCCACTTCCTGGTGTTACCCTCGGTGATATTGGTGGAAAGTTCGGTAGTGGTGCATATAACAG
tcttgat putative branch site (score: 134)
tatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtgttttgcttttgggaaatgcctttcttgatgcagtactgtcttcctttgtgacttatggtattacgcatgtcggtgttccagGTTTCATTGTGCAACTGCGAAGCTTAGAGGATCACTCCCCACTTCCTGGTGTTACCCTCGGTGATATTGGTGGAAAGTTCGGTAGTGGTGCATATAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA