1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agtggcatcacagccgagcaggtgcccagggtcgtcggctcctgtgtccgccactgcacactatcatgatgctacctgacttgtctaccatgttcaacagTTTAAGGGCTACTGGTGGTAGAGCTAACGGTGATGGAGCCAAGAAGACGAGAGCACGTGATCGACCTAAGGCAGTTCCAGCTCCAGAGGCAAATGCTGAA
species | Zea mays |
transcript | GRMZM2G052206_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCTCCAAGCAAAGAAATAGATGTGAAAAGAAGAGACGAAGAAGCCAGACG TTTAAGGGCTACTGGTGGTAGAGCTAACGGTGATGGAGCCAAGAAGACGAGEST: gi|211184733|gb|FL162031.1|FL162031
genomic: CCTCCAAGCAAAGAAATAGATGTGAAAAGAAGAGACGAAGAAGCCAGACGgtttgtcacc ... tgttcaacagTTTAAGGGCTACTGGTGGTAGAGCTAACGGTGATGGAGCCAAGAAGACGAG
EST: GAAATAGATGTGAAAAGAAGAGASGAAGAAGCCAGACG TTTAAGSGCTACTGGTGGTAGAGCTAACGGTGATGGAGCCAAGAAGACGAG
genomic: GAAATAGATGTGAAAAGAAGAGACGAAGAAGCCAGACGgtttgtcacc ... tgttcaacagTTTAAGGGCTACTGGTGGTAGAGCTAACGGTGATGGAGCCAAGAAGACGAG
gtccgccactgcacactatcatgatgctacctgacttgtctaccatgttcaacagTTTAAGGGCTACTGGTGGTAGAGCTAACGGTGATGGAGCCAAGAAGACGAGAGCACGTGATCGACCTAAGGCAGTTCCAGCTCCAGAGGCAAATGCTGAA
acctgac putative branch site (score: 5)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtggcatcacagccgagcaggtgcccagggtcgtcggctcctgtgtccgccactgcacactatcatgatgctacctgacttgtctaccatgttcaacagTTTAAGGGCTACTGGTGGTAGAGCTAACGGTGATGGAGCCAAGAAGACGAGAGCACGTGATCGACCTAAGGCAGTTCCAGCTCCAGAGGCAAATGCTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - gcatcac
- - - - - - - - -gcaggtg
- - - - - - - - - - - - - - - - - - -gctcctg
- - - - - - - - - - - - - - - - - - - - - - - -ccgccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gcacact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctacc