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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactaagatactagcgaatccgagttatttctaacatggcagaaatatttaacacgggttctctaatgcagGGGATGATAAGTGAATTTAGTGTGCCCGAAGACGCTGACAGCAGTTCACCAATATACCAATTCCAGTGGCTCTATGTCAATGGCCTACTCGGTGTCATAT

Basic information

species Zea mays
transcript GRMZM2G051753_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G051753_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g08020.1 (Oryza sativa), 3'ss of exon 5
gtactaagatactagcgaatccgagttatttctaacatggcagaaa-tatttaa--cacgggttctctaatgcagGGGATGATAAGTGAATTTAGTGTGCCCGAAGACGCTGACAGCAGTTCACCAATATACCAATTCCAGTGGCTCTATGTCAATGGCCTACTCGGTGTCATAT
||| |   |||      || |  |||| |||||| | ||| ||||| ||||||   || ||  | |||| ||||||| || |||   ||||| |  |||||   ||| || |||   |||||||| ||||| |||||||||||||| |||||||| ||||| || ||||| || |
gta-tgctatatctaataagctcagttctttctatcttggaagaaaatatttagaccagggcctatctattgcagGGAATTATAGAGGAATTCAAGGTGCCTAGAGATGCAGACCATAGTTCACCTATATATCAATTCCAGTGGCTGTATGTCAACGGCCTGCTTGGTGTTATCT

upper sequence: GRMZM2G051753_T01 (Zea mays), 3'ss of exon 5
lower sequence: Vv09s0002g05810.t01 (Vitis vinifera), 3'ss of exon 5
---gtactaagatactagcgaatccgagttatttcta-acatggcagaa---atatttaacacgggttctctaa--tgcagGGGATGATAAGTGAATTTAGTGTGCCCGAAGACGCTGACAGCAGTTCACCAATATACCAATTCCAGTGGCTCTATGTCAATGGCCTACTCGGTGTCATAT
     || ||  ||  |   ||    | ||||||  | | |||   |||   ||  |||     || | | | |  | |||||  || | | ||| ||||| || ||  |||  |  |||   |   ||   |  ||||||||||||||||||||||||||||| || ||| || | ||||
gtatcaccaatctagaaagtaaaataaattatttagatagatgatggaacagatgattatggaaggatgtttgaattacagGGAGTGGTGAATGAGTTTAGGGTTCCTAAAGGGGAAGACCCAAAGGCAGAGAAGTACCAATTCCAGTGGCTCTATGTCAATGGGCTGCTCAGTATTATAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatccgagttatttctaacatggcagaaatatttaacacgggttctctaatgcagGGGATGATAAGTGAATTTAGTGTGCCCGAAGACGCTGACAGCAGTTCACCAATATACCAATTCCAGTGGCTCTATGTCAATGGCCTACTCGGTGTCATAT
                                          ttctct  CT-rich tract
                        agaaatatttaaca  TA-rich tract