1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaggttctccaatcaactactggctttgcttcttcatgctagaggactctagagactccatctttatgtctttccttcctctcgaacagGCGGAGGAGCTTACTGTAATGGGCAAAAGATTCATGTCAGTCAGACAGACAAG
species | Zea mays |
transcript | GRMZM2G051276_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACAATTTCTGCATCTGCTG GCGGAGGAGCTTATTGTAATGGGCAAAAGATTCATGTCAGTCAGACAGACAEST: gi|22491531|gb|BU051454.1|BU051454
genomic: ACAATTTCTGCATCTGCTGgtaggttctc ... tctcgaacagGCGGAGGAGCTTACTGTAATGGGCAAAAGATTCATGTCAGTCAGACAGACA
EST: TTGTGGCGGGCCTATGTGCTGGAGCACCCGTACAATTTCTGCATCTGCTG GCGGAGGAGCTTATTGTAATGGGCAAAAGATTCATGTCAGTCAGACAGACAEST: gi|32921409|gb|CF026221.1|CF026221
genomic: TTGTGGCGGGCCTATGTGCTGGAGCACCCGTACAATTTCTGCATCTGCTGgtaggttctc ... tctcgaacagGCGGAGGAGCTTACTGTAATGGGCAAAAGATTCATGTCAGTCAGACAGACA
EST: ACAATTTCTGCATCTGCTG GCGGAGGAGCTTATTGTAATGGGCAAAAGATTCATGTCAGTCAGACAGACAEST: gi|32849542|gb|CD989223.1|CD989223
genomic: ACAATTTCTGCATCTGCTGgtaggttctc ... tctcgaacagGCGGAGGAGCTTACTGTAATGGGCAAAAGATTCATGTCAGTCAGACAGACA
EST: TACAATTTCTGCATCTGCTG GCGGAGGAGCTTATTGTAATGGGCAAAAGATTCATGTCAGTCAGACAGACAEST: gi|32921295|gb|CF026107.1|CF026107
genomic: TACAATTTCTGCATCTGCTGgtaggttctc ... tctcgaacagGCGGAGGAGCTTACTGTAATGGGCAAAAGATTCATGTCAGTCAGACAGACA
EST: ACAATTTCTGCATCTGCTG GCGGAGGAGCTTATTGTAATGGGCAAAAGATTCATGTCAGTCAGACAGACAEST: gi|19351081|gb|BM895613.1|BM895613
genomic: ACAATTTCTGCATCTGCTGgtaggttctc ... tctcgaacagGCGGAGGAGCTTACTGTAATGGGCAAAAGATTCATGTCAGTCAGACAGACA
EST: TTGTGGCGGGCCTATGTGCTGGAGCACCCGTACAATTTCTGCATCTGCTG GCGGAGGAGCTTATTGTAATGGGCAAAAGATTCATGTCAGTCAGACAGACAEST: gi|19350801|gb|BM895333.1|BM895333
genomic: TTGTGGCGGGCCTATGTGCTGGAGCACCCGTACAATTTCTGCATCTGCTGgtaggttctc ... tctcgaacagGCGGAGGAGCTTACTGTAATGGGCAAAAGATTCATGTCAGTCAGACAGACA
EST: TTGTGGCGGGCCTATGTGCTGGAGCACCCGTACAATTTCTGCATCTGCTG GCGGAGGAGCTTATTGTAATGGGCAAAAGATTCATGTCAGTCAGACAGACAEST: gi|89106256|gb|DY576473.1|DY576473
genomic: TTGTGGCGGGCCTATGTGCTGGAGCACCCGTACAATTTCTGCATCTGCTGgtaggttctc ... tctcgaacagGCGGAGGAGCTTACTGTAATGGGCAAAAGATTCATGTCAGTCAGACAGACA
EST: TTGTGGCGGGCCTATGTGCTGGAGCACCCGTACAATTTCTGCATCTGCTG GCGGAGGAGCTTATTGTAATGGGCAAAAGATTCATGTCAGTCAGACAGACAEST: gi|22491474|gb|BU051397.1|BU051397
genomic: TTGTGGCGGGCCTATGTGCTGGAGCACCCGTACAATTTCTGCATCTGCTGgtaggttctc ... tctcgaacagGCGGAGGAGCTTACTGTAATGGGCAAAAGATTCATGTCAGTCAGACAGACA
EST: TTGTGGCGGGCCTATGTGCTGGAGCACCCGTACAATTTCTGCATCTGCTG GCGGAGGAGCTTATTGTAATGGGCAAAAGATTCATGTCAGTCAGACAGACAEST: gi|101394982|gb|EB819425.1|EB819425
genomic: TTGTGGCGGGCCTATGTGCTGGAGCACCCGTACAATTTCTGCATCTGCTGgtaggttctc ... tctcgaacagGCGGAGGAGCTTACTGTAATGGGCAAAAGATTCATGTCAGTCAGACAGACA
EST: TTGTGGCGGGCCTATGTGCTGGAGCACCCGTACCATTTCTGCATCTGCTG GCGGAGGAGCTTACT
genomic: TTGTGGCGGGCCTATGTGCTGGAGCACCCGTACAATTTCTGCATCTGCTGgtaggttctc ... tctcgaacagGCGGAGGAGCTTACT
catgctagaggactctagagactccatctttatgtctttccttcctctcgaacagGCGGAGGAGCTTACTGTAATGGGCAAAAGATTCATGTCAGTCAGACAGACAAG
ctccatctttatgtct CT-rich tract
atctttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggttctccaatcaactactggctttgcttcttcatgctagaggactctagagactccatctttatgtctttccttcctctcgaacagGCGGAGGAGCTTACTGTAATGGGCAAAAGATTCATGTCAGTCAGACAGACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT