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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acgtagagagaaaaaatcactatgctatccgtagtgaattacttgattaattctgttgctttggaactgtacttgctagtgatgtttaatttcatcccagGCAACTGTGAGAGCAATTGCTGATGACCTTGGAGCAGACTTATGTGAGTGGACGACTCCAGTACCAACACTGTGGGCTGAACATGTTCATGCTAATTCAG

Basic information

species Zea mays
transcript GRMZM2G051138_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G051138_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os03g13850.1 (Oryza sativa), 3'ss of exon 5
acgtagagagaaaaaatcactatgctatccgtagtgaatt----acttgattaattctgttgcttt-------ggaactgtact-tgctagtgatgtttaatttcatcccagGCAACTGTGAGAGCAATTGCTGATGACCTTGGAGCAGACTTATGTGAGTGGACGACTCCAGTACCAACACTGTGGGCTGAACATGTTCATGCTAATTCAG
               |  | | || |  || |  ||| ||    || | |  || | |||||   |       |||  |||    || || ||||  |||  |  ||  ||||||||| | | ||||||||||| ||| |||||||  ||  |||||||||||||  | |||||||| ||||| ||| | |||||| | |||||||| ||||
------------gtgactattttgttgcccctgatgatttcagaaccttaggaactatgttgacctattgatgggagttgtctaatgataatgattgttacatctattacagGCAACTATCAAAGCAATTGCTGCTGAGCTTGGAGTTGAGATATGTGAGTGGACAGCCCCAGTACCGACACTATGGACAGAACATTTGCATGCTAACTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148969297|gb|EE020069.2|EE020069
EST:     TTGGAGGATGGACCCTTGTCCTAACTGGGCAAACTGGTGTTGGAAAATCA                         GCAACTGTGAGAGCAATTGCTGATGACCTTGGAGCAGACTTATGTGAGTGG
genomic: TTGGAGGATGGACCCTTGTCCTAACTGGGCAAACTGGTGTTGGAAAATCAgtatgttcat ... ttcatcccagGCAACTGTGAGAGCAATTGCTGATGACCTTGGAGCAGACTTATGTGAGTGG
EST: gi|78079477|gb|DV507889.1|DV507889
EST:     TTGGAGGATGGACCCTTGTCCTAACTGGGCAAACTGGTGTTGGAAAATCA                         GCAACTGTGAGAGCAATTGCTGATGACCTTGGAGCAGACTTATGTGAGTGG
genomic: TTGGAGGATGGACCCTTGTCCTAACTGGGCAAACTGGTGTTGGAAAATCAgtatgttcat ... ttcatcccagGCAACTGTGAGAGCAATTGCTGATGACCTTGGAGCAGACTTATGTGAGTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attaattctgttgctttggaactgtacttgctagtgatgtttaatttcatcccagGCAACTGTGAGAGCAATTGCTGATGACCTTGGAGCAGACTTATGTGAGTGGACGACTCCAGTACCAACACTGTGGGCTGAACATGTTCATGCTAATTCAG
                                            tttcatccc  CT-rich tract
                                    atgtttaatttcat  TA-rich tract