1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtgacagcacatgatgctgctaagatatggtgttgaggctgtgttactcattcatgcccttttgccgttcagGCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACACAGCTATCTGATGGAGTACAAACCCCATGATGCTTCGCGGCGTGACAACT
species | Zea mays |
transcript | GRMZM2G048703_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAG GCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACACEST: gi|16917882|gb|BM073472.1|BM073472
genomic: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAGgtaagtgaca ... tgccgttcagGCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACAC
EST: TCAATGAAGACATTTTGAGCGTCTGGAACCGGAACGCATCAGACCATCAG GCTGTGATGGCATTGAGGGATTCTATAAAGAGGCCCCTCAAGCTGCCACACEST: gi|211119484|gb|FK964938.1|FK964938
genomic: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAGgtaagtgaca ... tgccgttcagGCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACAC
EST: CAATGAAGACATTCTGAGCGTCTGGAACCCGGA-CGCATCAGACCATCAG GCTGTGATGGCATTGAGGGATTCTATCAAGAGGCACCTCAAGCTTGCG-CAEST: gi|148936054|gb|EC880114.2|EC880114
genomic: CAATGAAGACATTCTGAGCGTCTGGAACC-GGAACGCATCAGACCATCAGgtaagtgaca ... tgccgttcagGCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCT-GCCACA
EST: TCAATGAAGACATTCTGAGCGTCTGGGACCGGAACGCATCAGACCATCAG GCTGTGATGGCATTGAGGGATTCTATAAAGAAGCACCTCCAGCTGCCACACEST: gi|87153049|gb|DY397838.1|DY397838
genomic: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAGgtaagtgaca ... tgccgttcagGCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACAC
EST: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAG GCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACACEST: gi|6342628|gb|AW165452.1|AW165452
genomic: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAGgtaagtgaca ... tgccgttcagGCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACAC
EST: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAG GCTGTGATGGCATTGAGGGATTCTATCAAGAGGCACCTCAAGCTGCCGCACEST: gi|6445424|gb|AW179492.1|AW179492
genomic: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAGgtaagtgaca ... tgccgttcagGCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACAC
EST: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAG GCTG-GATGGCATTGAGG-ATTCTEST: gi|18180251|gb|BM381461.1|BM381461
genomic: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAGgtaagtgaca ... tgccgttcagGCTGTGATGGCATTGAGGGATTCT
EST: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAG GCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACACEST: gi|74232667|gb|DT640581.1|DT640581
genomic: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAGgtaagtgaca ... tgccgttcagGCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACAC
EST: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAG GCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACACEST: gi|28361610|gb|CB239966.1|CB239966
genomic: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAGgtaagtgaca ... tgccgttcagGCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACAC
EST: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAG GCTGTGATGGCATTGGAGGGATTCTATAAAGAGGCACCTCAAGCTEST: gi|93012199|gb|EB637719.1|EB637719
genomic: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAGgtaagtgaca ... tgccgttcagGCTGTGATGGCATTG-AGGGATTCTATAAAGAGGCACCTCAAGCT
EST: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAG GCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACACEST: gi|211254818|gb|FK964953.1|FK964953
genomic: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAGgtaagtgaca ... tgccgttcagGCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACAC
EST: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAG GCTGTGATGGCATTGAGGGATTCTATAANGAGGCACCTCAAGCTGCCACACEST: gi|31612425|gb|CD569047.1|CD569047
genomic: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAGgtaagtgaca ... tgccgttcagGCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACAC
EST: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAG GCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACACEST: gi|71327672|gb|DR800450.1|DR800450
genomic: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAGgtaagtgaca ... tgccgttcagGCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACAC
EST: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAG GCTGTGATGGCATTGAGGGATTCTATCAAGAGGCACCTCAAGCTGCCGCACEST: gi|91053786|gb|EB164204.1|EB164204
genomic: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAGgtaagtgaca ... tgccgttcagGCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACAC
EST: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAG GCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACACEST: gi|14245305|gb|BG873887.1|BG873887
genomic: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAGgtaagtgaca ... tgccgttcagGCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACAC
EST: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAG GCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACACEST: gi|74232666|gb|DT640580.1|DT640580
genomic: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAGgtaagtgaca ... tgccgttcagGCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACAC
EST: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAG GCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACACEST: gi|19058335|gb|BM737002.1|BM737002
genomic: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAGgtaagtgaca ... tgccgttcagGCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACAC
EST: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAG GCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACACEST: gi|113647698|gb|DW805654.1|DW805654
genomic: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAGgtaagtgaca ... tgccgttcagGCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACAC
EST: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAG GCTGTGATGGCATTGAGGGATCCTATAAAGAGGCACCTCAAGEST: gi|60351308|gb|DN218281.1|DN218281
genomic: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAGgtaagtgaca ... tgccgttcagGCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAG
EST: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAG GCTGTGATGGCATTGAGGGATTCTATCAAGAGGCACCTCAAGCTGCCGCACEST: gi|5499467|gb|AI855334.1|AI855334
genomic: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAGgtaagtgaca ... tgccgttcagGCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACAC
EST: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAG GCTGTGATGGCATTGAGGGATTCTATAAAGAGGCCCCTCAAGCTGCCCCCCEST: gi|78088649|gb|DV517042.1|DV517042
genomic: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAGgtaagtgaca ... tgccgttcagGCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACAC
EST: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAG GCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACACEST: gi|211254822|gb|FK964957.1|FK964957
genomic: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAGgtaagtgaca ... tgccgttcagGCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACAC
EST: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAG GCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCCTCA-GCTGCCACAEST: gi|78088650|gb|DV517043.1|DV517043
genomic: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAGgtaagtgaca ... tgccgttcagGCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACC-TCAAGCTGCCACA
EST: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAG GCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACACEST: gi|211119477|gb|FK964931.1|FK964931
genomic: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAGgtaagtgaca ... tgccgttcagGCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACAC
EST: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAG GCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACACEST: gi|31349975|gb|CD434332.1|CD434332
genomic: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAGgtaagtgaca ... tgccgttcagGCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACAC
EST: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCACACCATCAG GCTGTGATGGCATTGAGGGATTCTATCAAGAGGCACCTCAAGCTGCCGCACEST: gi|28361792|gb|CB240148.1|CB240148
genomic: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAGgtaagtgaca ... tgccgttcagGCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACAC
EST: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAG GCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACACEST: gi|15199121|gb|BI423668.1|BI423668
genomic: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAGgtaagtgaca ... tgccgttcagGCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACAC
EST: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAG GCTGTGATGGCATTGAGGGATTCTATCAAGAGGCACCTCAAGCTGCCGCACEST: gi|149070116|gb|EE158515.2|EE158515
genomic: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAGgtaagtgaca ... tgccgttcagGCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACAC
EST: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAG GCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACACEST: gi|89760553|gb|DY688916.1|DY688916
genomic: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAGgtaagtgaca ... tgccgttcagGCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACAC
EST: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAG GCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACACEST: gi|149005273|gb|EE039821.2|EE039821
genomic: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAGgtaagtgaca ... tgccgttcagGCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACAC
EST: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAG GCTGTGATGGCATTGAGGGATTCTATCAAGAGGCACCTCAAGCTGCCGCACEST: gi|32834070|gb|CD973748.1|CD973748
genomic: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAGgtaagtgaca ... tgccgttcagGCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACAC
EST: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAG GCTGTGATGGCATTGAGGGATTCTATCAAGAGGCACCTCAAGCTGCCGCACEST: gi|22490736|gb|BU050659.1|BU050659
genomic: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAGgtaagtgaca ... tgccgttcagGCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACAC
EST: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAG GCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACAC
genomic: TCAATGAAGACATTCTGAGCGTCTGGAACCGGAACGCATCAGACCATCAGgtaagtgaca ... tgccgttcagGCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACAC
tgctaagatatggtgttgaggctgtgttactcattcatgcccttttgccgttcagGCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACACAGCTATCTGATGGAGTACAAACCCCATGATGCTTCGCGGCGTGACAACT
cccttttgccgttc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgacagcacatgatgctgctaagatatggtgttgaggctgtgttactcattcatgcccttttgccgttcagGCTGTGATGGCATTGAGGGATTCTATAAAGAGGCACCTCAAGCTGCCACACAGCTATCTGATGGAGTACAAACCCCATGATGCTTCGCGGCGTGACAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA