1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgataacattttcttttctgttgtgtgttgtcttcccatcctctcgttattgaatttatactgataacaggcattgttgtacagAAGCATGCAGGAAGTTTATCAGAGGGTTTTTATCAGACTCAAGTTAGTACCTTGGCAGTCAAGGACAATTTACTGGTAGCTGGTGGGTTTCAAGGAGAGC
species | Zea mays |
transcript | GRMZM2G048045_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTGTCGATACTGAACTTATCAACGTCCAAGGACACGTGGCACCAAGGGAG AAGCATGCAGGAAGTTTATCAGAGGGTTTTTATCAGACTCAAGTTAGTACCEST: gi|211456722|gb|FL410364.1|FL410364
genomic: GTGTCGATACTGAACTTATCAACGTCCAAGGACACGTGGCACCAAGGGAGgtatgataac ... tgttgtacagAAGCATGCAGGAAGTTTATCAGAGGGTTTTTATCAGACTCAAGTTAGTACC
EST: GTGTCGATACTGAACTTATCAACGTCCAAGGACACGTGGCACCAAGGGAG AAGCATGCAGGAAGTTTATCAGAGEST: gi|211509379|gb|FL412049.1|FL412049
genomic: GTGTCGATACTGAACTTATCAACGTCCAAGGACACGTGGCACCAAGGGAGgtatgataac ... tgttgtacagAAGCATGCAGGAAGTTTATCAGAG
EST: GTGTCGATACTGAACTTATCAACGTCCAAGGACACGTGGCACCAAGGGAG AAGCATGCAGGAAGTTTATCAGAGGGTTTTTATCAGACTCAAGTTAGTACCEST: gi|33101585|gb|CF061545.1|CF061545
genomic: GTGTCGATACTGAACTTATCAACGTCCAAGGACACGTGGCACCAAGGGAGgtatgataac ... tgttgtacagAAGCATGCAGGAAGTTTATCAGAGGGTTTTTATCAGACTCAAGTTAGTACC
EST: GTGTCGATACTGAACTTATCAACGTCCAAGGACACGTGGCACCAAGGGAG AAGCATGCAGGAAGTTTATCAGAGGGTTTTTATCAGACTCAAGTTAGTACCEST: gi|148942098|gb|EC887100.2|EC887100
genomic: GTGTCGATACTGAACTTATCAACGTCCAAGGACACGTGGCACCAAGGGAGgtatgataac ... tgttgtacagAAGCATGCAGGAAGTTTATCAGAGGGTTTTTATCAGACTCAAGTTAGTACC
EST: GTGTCGATACTGAACTTATCAACGTCCAAGGACACGTGGCACCAAGGGAG AAGCATGCAGGAAGTTTATCAGAGGGTTTTTATCAGACTCAAGTTAGTACCEST: gi|211109347|gb|FL402577.1|FL402577
genomic: GTGTCGATACTGAACTTATCAACGTCCAAGGACACGTGGCACCAAGGGAGgtatgataac ... tgttgtacagAAGCATGCAGGAAGTTTATCAGAGGGTTTTTATCAGACTCAAGTTAGTACC
EST: GTGTCGATACTGAACTTATCAACGTCCAAGGACACGTGGCACCAAGGGAG AAGCATGCAGGAAGTTTATCAGAGGGTTTTTATCAGACTCAAGTTAGTACCEST: gi|71332422|gb|DR803167.1|DR803167
genomic: GTGTCGATACTGAACTTATCAACGTCCAAGGACACGTGGCACCAAGGGAGgtatgataac ... tgttgtacagAAGCATGCAGGAAGTTTATCAGAGGGTTTTTATCAGACTCAAGTTAGTACC
EST: GTGTCGATACTGAACTTATCAACGTCCAAGGACACGTGGCACCAAGGGAG AAGCATGCAGGAAGTTTATCAGAGGGTTTTTATCAGACTCAAGTTAGTACCEST: gi|211169918|gb|FL423118.1|FL423118
genomic: GTGTCGATACTGAACTTATCAACGTCCAAGGACACGTGGCACCAAGGGAGgtatgataac ... tgttgtacagAAGCATGCAGGAAGTTTATCAGAGGGTTTTTATCAGACTCAAGTTAGTACC
EST: TGTCGATACTGAACTTTATCA-CGTCCA-GGACACGTGGCACCAAGGGAG AAGCATGCANGAAGTTTATCAGAGGGTTTT-ATCAGACTCA-GTTAGTACCEST: gi|7137774|gb|AW499263.1|AW499263
genomic: TGTCGATACTGAACTT-ATCAACGTCCAAGGACACGTGGCACCAAGGGAGgtatgataac ... tgttgtacagAAGCATGCAGGAAGTTTATCAGAGGGTTTTTATCAGACTCAAGTTAGTACC
EST: GTGTCGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAG AAGCATGCAGGAAGTTTATCAGAGGGTTTTTATCEST: gi|71320210|gb|DR796860.1|DR796860
genomic: GTGTCGATACTGAACTTATCAACGTCCAAGGACACGTGGCACCAAGGGAGgtatgataac ... tgttgtacagAAGCATGCAGGAAGTTTATCAGAGGGTTTTTATC
EST: GTGTCGATACTGAACTTATCAACGTCCAAGGACACGTGGCACCAAGGGAG AAGCATGCAGGAAGTTTATCAGAGGGTTTTTATCAGACTCAAGTTAGTACC
genomic: GTGTCGATACTGAACTTATCAACGTCCAAGGACACGTGGCACCAAGGGAGgtatgataac ... tgttgtacagAAGCATGCAGGAAGTTTATCAGAGGGTTTTTATCAGACTCAAGTTAGTACC
gtcttcccatcctctcgttattgaatttatactgataacaggcattgttgtacagAAGCATGCAGGAAGTTTATCAGAGGGTTTTTATCAGACTCAAGTTAGTACCTTGGCAGTCAAGGACAATTTACTGGTAGCTGGTGGGTTTCAAGGAGAGC
tgataac putative branch site (score: 120)
ttattgaatttatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgataacattttcttttctgttgtgtgttgtcttcccatcctctcgttattgaatttatactgataacaggcattgttgtacagAAGCATGCAGGAAGTTTATCAGAGGGTTTTTATCAGACTCAAGTTAGTACCTTGGCAGTCAAGGACAATTTACTGGTAGCTGGTGGGTTTCAAGGAGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA