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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaatgatcactctacctatgctcaaaattcaatgtataatagtgtgaatatattttttatgacttttctctccaaactatgcagGTTTCCAAAGAATTCTTTCCAAACTTATCCATTGGATTCAAAGATCCTCGTGTCCGACTTCATGTTGGTGATG

Basic information

species Zea mays
transcript GRMZM2G047867_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G047867_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os06g33710.1 (Oryza sativa), 3'ss of exon 6
gtaagaatgatcactctacctatgctcaaaattcaatgtataatagtgtgaatatattttttatgacttttctctccaaactatgcagGTTTCCAAAGAATTCTTTCCAAACTTATCCATTGGATTCAAAGATCCTCGTGTCCGACTTCATGTTGGTGATG
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gtaagaagcatcacttta----tgctttagagtagaattgtcaaattattgttattttaatgattattatgctctc-aacctatgcagGTCTGTAAAGATTTCTTCCCACAACTATCTGTTGGATTCAAAGATCCCCGTGTTCAACTTCATGTTGGTGACG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71333307|gb|DR803710.1|DR803710
EST:     ATTCAGTGGAAACTATTGATATATGTGAGATTGATCTACTAGTTATTGAT                         GTTTCCAAAGAATTCTTTCCAAACCTATCCATTGGATTCAAAGATCCTCGT
genomic: ATTCAGTGGAAACTATTGATATATGTGAGATTGATCAACTAGTTATTGATgtaagaatga ... aactatgcagGTTTCCAAAGAATTCTTTCCAAACTTATCCATTGGATTCAAAGATCCTCGT
EST: gi|5895598|gb|AW036844.1|AW036844
EST:     ATTCAGTGGAAACTATTGATATATGTGAGATTGATCAACTAGTTATTGAT                         GTTTGCAAAGAATTCTTTCCAAACTTATCCATTGGATTCAAAGATCCTCGT
genomic: ATTCAGTGGAAACTATTGATATATGTGAGATTGATCAACTAGTTATTGATgtaagaatga ... aactatgcagGTTTCCAAAGAATTCTTTCCAAACTTATCCATTGGATTCAAAGATCCTCGT
EST: gi|88757916|gb|DY542057.1|DY542057
EST:     ATTCAGTGGAAACTATTGATATATGTGAGATTGATCAACTAGTTATTGAT                         GTTTCCAAAGAATTCTTTCCAAACTTATCCATTGGATTCAAAGATCCTCGT
genomic: ATTCAGTGGAAACTATTGATATATGTGAGATTGATCAACTAGTTATTGATgtaagaatga ... aactatgcagGTTTCCAAAGAATTCTTTCCAAACTTATCCATTGGATTCAAAGATCCTCGT
EST: gi|5791184|gb|AI977976.1|AI977976
EST:     GAGATTGATCAACTAGATATTGAT                         GTTTGCAAAGAAGTCTTTCCAAACTTATCCATTGGATTCAAAGATCCTCGT
genomic: GAGATTGATCAACTAGTTATTGATgtaagaatga ... aactatgcagGTTTCCAAAGAATTCTTTCCAAACTTATCCATTGGATTCAAAGATCCTCGT
EST: gi|5847488|gb|AW000567.1|AW000567
EST:     AAACTATTGATATATGTGAGATTGATCAACTAGTTATTGAT                         GTTTGCAAAGAATTCTTTCCAAACTTATCCATTGGATTCAAAGATCCTCGT
genomic: AAACTATTGATATATGTGAGATTGATCAACTAGTTATTGATgtaagaatga ... aactatgcagGTTTCCAAAGAATTCTTTCCAAACTTATCCATTGGATTCAAAGATCCTCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatgtataatagtgtgaatatattttttatgacttttctctccaaactatgcagGTTTCCAAAGAATTCTTTCCAAACTTATCCATTGGATTCAAAGATCCTCGTGTCCGACTTCATGTTGGTGATG
     tataatagtgtgaata  TA-rich tract