1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tagtgcattcaacacccccttagtctgctgaacatttggttgttggagaagtatggaaatgctcccaattgactcggttatacgtcttattcaagagcagAAAGTTAGTCTAGCTCGAAGGTTCGCGCTTGTTCCCTTGGGACCGCCACTACTGACTTACAGGAGCAACTGCAAAGCGATGTTGACAGCTGATGGTGATT
species | Zea mays |
transcript | GRMZM2G047695_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TATTCAAGCAGGCTTTTGTTGCAGTACAGTCTTGTGTGGTTCATTTGCAG AAAGTTAGTCTAGCTCGAAGGTTCGCGCTTGTTCCCTTGGGACCACCACTAEST: gi|71437981|gb|DR819031.1|DR819031
genomic: TATTCAAGCAGGCTTTTGTTGCAGTACAGTCTTGTGTGGTTCATTTGCAGgtaacgtgct ... tcaagagcagAAAGTTAGTCTAGCTCGAAGGTTCGCGCTTGTTCCCTTGGGACCGCCACTA
EST: TATTCAAGCAGGCTTTTGTTGCAGTACAGTCTTGTGTGGTTCATTTGCAG AAAGTTAGTCTAGCTCGAAGGTTCGCGCTTGTTCCCTTGGGACCGCCACTA
genomic: TATTCAAGCAGGCTTTTGTTGCAGTACAGTCTTGTGTGGTTCATTTGCAGgtaacgtgct ... tcaagagcagAAAGTTAGTCTAGCTCGAAGGTTCGCGCTTGTTCCCTTGGGACCGCCACTA
gagaagtatggaaatgctcccaattgactcggttatacgtcttattcaagagcagAAAGTTAGTCTAGCTCGAAGGTTCGCGCTTGTTCCCTTGGGACCGCCACTACTGACTTACAGGAGCAACTGCAAAGCGATGTTGACAGCTGATGGTGATT
aattgac putative branch site (score: 3)
tcttattc putative PPT
ttattcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtgcattcaacacccccttagtctgctgaacatttggttgttggagaagtatggaaatgctcccaattgactcggttatacgtcttattcaagagcagAAAGTTAGTCTAGCTCGAAGGTTCGCGCTTGTTCCCTTGGGACCGCCACTACTGACTTACAGGAGCAACTGCAAAGCGATGTTGACAGCTGATGGTGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- -tgcattc
- - - - - - caccccc
- - - - - - - - - - - -tctgctg
- - - - - - - - - - - - - - - - - -ttggttg