1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagctctcagtgggatccgatccgatccgacttgcatctgtatctgtggttctgatgtccaagcacttggtgctagaacttgagaacaagctaacatgttctccgcttggtttctgccagCTTCCCTGCGTCATGTGGCTCGCGATCTACAAGCCCAAGAGGTTCAGCCTCTCGTGGTTCACCAACTGG
species | Zea mays |
transcript | GRMZM2G046743_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GACTGCTCGGCTTCTTCGGCGGATTCGCCTTTGCACCGACGACCTATTTC CTTCCCTGCGTCATGTGGCTCGCGATCTACAAGCCCAAGAGGTTCAGCCTCEST: gi|71761350|gb|DR959287.1|DR959287
genomic: GACTGCTCGGCTTCTTCGGCGGATTCGCCTTTGCACCGACGACCTATTTCgtaagctctc ... tttctgccagCTTCCCTGCGTCATGTGGCTCGCGATCTACAAGCCCAAGAGGTTCAGCCTC
EST: GACTGCTCGGCTTCTTCGGCGGATTCGCCTTTGCACCGACGACCTATTTC CTTCCCTGCGTCATGTGGCTCGCGATCTACAAGCCCAAGAGGTTCAGCCTCEST: gi|149000252|gb|EE037405.2|EE037405
genomic: GACTGCTCGGCTTCTTCGGCGGATTCGCCTTTGCACCGACGACCTATTTCgtaagctctc ... tttctgccagCTTCCCTGCGTCATGTGGCTCGCGATCTACAAGCCCAAGAGGTTCAGCCTC
EST: GACTGCTCGGCTTTTTCGGCGGATTCGCCTTTGCACCGACGACCTATTTC CTTCCCTGCGTCATGTGGCTCGCGATCTACAAGCCCAAGAGGTTCAGCCTCEST: gi|37385478|gb|CF629883.1|CF629883
genomic: GACTGCTCGGCTTCTTCGGCGGATTCGCCTTTGCACCGACGACCTATTTCgtaagctctc ... tttctgccagCTTCCCTGCGTCATGTGGCTCGCGATCTACAAGCCCAAGAGGTTCAGCCTC
EST: GACTGCTCGGCTTCTTCGGCGGATTCGCCTTTGCACCGACGACCTATTTC CTTCCCTGCGTCATGTGGCTCGCGATCTACAAGCCCAAGAGGTTCAGCCTCEST: gi|50336113|gb|CO531239.1|CO531239
genomic: GACTGCTCGGCTTCTTCGGCGGATTCGCCTTTGCACCGACGACCTATTTCgtaagctctc ... tttctgccagCTTCCCTGCGTCATGTGGCTCGCGATCTACAAGCCCAAGAGGTTCAGCCTC
EST: GACTGCTCGGCTTCTTCGGCGGATTCGCCTTTGCACCGACGACCTATTTC CTTCCCTGCGTCATGTGGCTCGCGATCTACAAGCCCAAGAGGTTCAGCCTCEST: gi|40334334|gb|CK368404.1|CK368404
genomic: GACTGCTCGGCTTCTTCGGCGGATTCGCCTTTGCACCGACGACCTATTTCgtaagctctc ... tttctgccagCTTCCCTGCGTCATGTGGCTCGCGATCTACAAGCCCAAGAGGTTCAGCCTC
EST: GACTGCTCGGCTTCTTCGGCGGATTCGCCTTTGCACCGACGACCTATTTC CTTCCCTGCGTCATGTGGCTCGCGATCTACAAGCCCAAGAGGTTCAGCCTC
genomic: GACTGCTCGGCTTCTTCGGCGGATTCGCCTTTGCACCGACGACCTATTTCgtaagctctc ... tttctgccagCTTCCCTGCGTCATGTGGCTCGCGATCTACAAGCCCAAGAGGTTCAGCCTC
cttggtgctagaacttgagaacaagctaacatgttctccgcttggtttctgccagCTTCCCTGCGTCATGTGGCTCGCGATCTACAAGCCCAAGAGGTTCAGCCTCTCGTGGTTCACCAACTGG
agctaac putative branch site (score: 68)
tttctgcc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctctcagtgggatccgatccgatccgacttgcatctgtatctgtggttctgatgtccaagcacttggtgctagaacttgagaacaagctaacatgttctccgcttggtttctgccagCTTCCCTGCGTCATGTGGCTCGCGATCTACAAGCCCAAGAGGTTCAGCCTCTCGTGGTTCACCAACTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG