1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtaatttccctccctccctcaggtcttctgttatggtatagcattgctctggtgacatttgcctctgcttgagacagGTTAAACTTCTTTTTGCTGGGGAGCGCCAACTTTGCGACCAAGTTTTTGAGTGCAGTCAATCGTTGAGGGATAAGTGCTTTGCTGCAATAACAAAGAACA
species | Zea mays |
transcript | GRMZM2G046590_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAATTTTGGAGTCTAAAATAGGGAATTGGATTCATTTCATGCGAATTGCT GTTAAACTTCTTTTTGCTGGGGAGCGCCAACTTTGCGACCAAGTTTTTGAGEST: gi|60358995|gb|DN225968.1|DN225968
genomic: AAATTTTGGAGTCTAAAATAGGGAATTGGATTCATTTCATGCGAATTGCTgtaagtaatt ... cttgagacagGTTAAACTTCTTTTTGCTGGGGAGCGCCAACTTTGCGACCAAGTTTTTGAG
EST: AAATTTTGGAGTCTAAAATAGGGAATTGGATTCATTTCATGCGAATTGCT GTTAAACTTCTTTTTGCTGGGGAGCGCCAACTTTGCGACCAAGTTTTTGAGEST: gi|6626352|gb|AW257884.1|AW257884
genomic: AAATTTTGGAGTCTAAAATAGGGAATTGGATTCATTTCATGCGAATTGCTgtaagtaatt ... cttgagacagGTTAAACTTCTTTTTGCTGGGGAGCGCCAACTTTGCGACCAAGTTTTTGAG
EST: AAATTTTGGAGTCTAAAATAGGGAATTGGATTCATTTCATGCGAATTGCT GT-AAACTTCTTTTTEST: gi|149088666|gb|EE177784.2|EE177784
genomic: AAATTTTGGAGTCTAAAATAGGGAATTGGATTCATTTCATGCGAATTGCTgtaagtaatt ... cttgagacagGTTAAACTTCTTTTT
EST: ATTTTGGAGTCTAAAATAGGGGAATTGGATTCATTTCATGCGAATTTGCT GGTAAACTTCTTTTTGCTGGGGAGCG
genomic: ATTTTGGAGTCTAAAATAGGG-AATTGGATTCATTTCATGCGAATT-GCTgtaagtaatt ... cttgagacagGTTAAACTTCTTTTTGCTGGGGAGCG
gtcttctgttatggtatagcattgctctggtgacatttgcctctgcttgagacagGTTAAACTTCTTTTTGCTGGGGAGCGCCAACTTTGCGACCAAGTTTTTGAGTGCAGTCAATCGTTGAGGGATAAGTGCTTTGCTGCAATAACAAAGAACA
cctctgctt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaatttccctccctccctcaggtcttctgttatggtatagcattgctctggtgacatttgcctctgcttgagacagGTTAAACTTCTTTTTGCTGGGGAGCGCCAACTTTGCGACCAAGTTTTTGAGTGCAGTCAATCGTTGAGGGATAAGTGCTTTGCTGCAATAACAAAGAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC