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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttaatgtatgcagcgtttcggtagccttttattatcagctttattctaacattgtgtgctctttttctggaagGAACAAGTTGTCCCTGGGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAG

Basic information

species Zea mays
transcript GRMZM2G046587_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G046587_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g47600.2 (Oryza sativa), 3'ss of exon 5
gtatttta---atgtatgcagcgtttcggtagccttttattatcagctttattctaacattg--tgtgctctttttctggaagGAACAAGTTGTCCCTGGGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAG
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gtaactgatggatgtgtgtgtgttttttaaaagaaaatat-acaaacctt-ctctaacattgcttctttttctctcctgatagGAACAAGTTGTCCCTGGATGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATTGATCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19351061|gb|BM895593.1|BM895593
EST:     GCACACTCTGTGAGGATAACGACCCCCTGGATGTCCTCATACTGATGCAG                         GAACAAGTTGTCCCTGGGTGTTTCTTGCGAGCTCGTGCTATTGGGCTCATG
genomic: GCACACTCTGTGAGGATAACGACCCCCTGGATGTCCTCATACTGATGCAGgtattttaat ... tttctggaagGAACAAGTTGTCCCTGGGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATG
EST: gi|32849179|gb|CD988860.1|CD988860
EST:     GCACACTCTGTGAGGATAACGACCCCCTGGATGTCCTCATACTGATGCGG                         GAACAAGTTGTCCCTGGGTGTTTCTTGCGAGCTCGTGCTATTTGGCTCATG
genomic: GCACACTCTGTGAGGATAACGACCCCCTGGATGTCCTCATACTGATGCAGgtattttaat ... tttctggaagGAACAAGTTGTCCCTGGGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATG
EST: gi|32924525|gb|CF029337.1|CF029337
EST:     GCACACTCTGTGAGGATAACGACCCCCTGGATGTCCTCATACTGATGCAG                         GAACAAGTTGTCCCTGGGTGTTTCTTGCGAGCTCGTGCTATTGGGCTCATG
genomic: GCACACTCTGTGAGGATAACGACCCCCTGGATGTCCTCATACTGATGCAGgtattttaat ... tttctggaagGAACAAGTTGTCCCTGGGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATG
EST: gi|18168735|gb|BM338575.1|BM338575
EST:     GCACACTCTGTGAGGATAACGACCCCCTGGATGTCCTCATACTGATGCAG                         GAACAAGTTGTCCCTGGGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATG
genomic: GCACACTCTGTGAGGATAACGACCCCCTGGATGTCCTCATACTGATGCAGgtattttaat ... tttctggaagGAACAAGTTGTCCCTGGGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATG
EST: gi|76016905|gb|DT944075.1|DT944075
EST:     CCCCCTGGATGTCCTCATATTGATGCAG                         GAACAAGTTGTCCCTGGGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATG
genomic: CCCCCTGGATGTCCTCATACTGATGCAGgtattttaat ... tttctggaagGAACAAGTTGTCCCTGGGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATG
EST: gi|149099848|gb|EE185900.2|EE185900
EST:     GCACACTCTGTGAGGATAACGACCCCCTGGATGTCCTCATACTGATGCAG                         GAACAAGTTGTCCCTGGGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATG
genomic: GCACACTCTGTGAGGATAACGACCCCCTGGATGTCCTCATACTGATGCAGgtattttaat ... tttctggaagGAACAAGTTGTCCCTGGGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATG
EST: gi|74244615|gb|DT652529.1|DT652529
EST:     GCACACTCTGTGAGGATAACGACCCCCTGGATGTCCTCATACTGATGCAG                         GAACAAGTTGTCCCTGGGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATG
genomic: GCACACTCTGTGAGGATAACGACCCCCTGGATGTCCTCATACTGATGCAGgtattttaat ... tttctggaagGAACAAGTTGTCCCTGGGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATG
EST: gi|74244614|gb|DT652528.1|DT652528
EST:     GCACACTCTGTGAGGATAACGACCCCCTGGATGTCCTCATACTGATGCAG                         GAACAAGTTGTCCCTGGGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATG
genomic: GCACACTCTGTGAGGATAACGACCCCCTGGATGTCCTCATACTGATGCAGgtattttaat ... tttctggaagGAACAAGTTGTCCCTGGGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATG
EST: gi|13126527|gb|BG317097.1|BG317097
EST:     GCACACTCTGTGAGGATAACGACCCCCTGGATGTCCTCATACTGATGCAG                         GAACAAGTTGTCCCTGGGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATG
genomic: GCACACTCTGTGAGGATAACGACCCCCTGGATGTCCTCATACTGATGCAGgtattttaat ... tttctggaagGAACAAGTTGTCCCTGGGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATG
EST: gi|211349013|gb|FL190902.1|FL190902
EST:     GCACACTCTGTGAGGATAACGACCCCCTGGATGTCCTCATACTGATGCAG                         GAACAAGTTGTCCCTGGGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATG
genomic: GCACACTCTGTGAGGATAACGACCCCCTGGATGTCCTCATACTGATGCAGgtattttaat ... tttctggaagGAACAAGTTGTCCCTGGGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATG
EST: gi|17931649|gb|BM268609.1|BM268609
EST:     GCACACTCTGTGAGGATAACGACCCCCTGGATGTCCTCATACTGATGCAG                         GAACAAGTTGTCCCTGGGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATG
genomic: GCACACTCTGTGAGGATAACGACCCCCTGGATGTCCTCATACTGATGCAGgtattttaat ... tttctggaagGAACAAGTTGTCCCTGGGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATG
EST: gi|60337363|gb|DN204336.1|DN204336
EST:     GCACACTCTGTGAGGATAACGACCCCCTGGATGTCCTCATACTGATGCAG                         GAACAAGTTGTCCCTGGGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATG
genomic: GCACACTCTGTGAGGATAACGACCCCCTGGATGTCCTCATACTGATGCAGgtattttaat ... tttctggaagGAACAAGTTGTCCCTGGGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATG
EST: gi|32924252|gb|CF029064.1|CF029064
EST:     GCACACTCTGTGAGGATAACGACCCCCTGGATGTCCTCATACTGATGCAG                         GAACAAGTTGTCCCTGGGTGTTTCTTGCGAGCTCGTGCTATTGGGCTCATG
genomic: GCACACTCTGTGAGGATAACGACCCCCTGGATGTCCTCATACTGATGCAGgtattttaat ... tttctggaagGAACAAGTTGTCCCTGGGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATG
EST: gi|60348368|gb|DN215341.1|DN215341
EST:     GCACACTCTGTGAGGATAACGACCCCCTGGATGTCCTCATACTGATGCAG                         GAACAAGTTGTCCCTGGGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATG
genomic: GCACACTCTGTGAGGATAACGACCCCCTGGATGTCCTCATACTGATGCAGgtattttaat ... tttctggaagGAACAAGTTGTCCCTGGGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATG
EST: gi|32831285|gb|CD970963.1|CD970963
EST:     GCACACTCTGTGAGGATAACGACCCCCTGGATGTCCTCATACTGATGCAG                         GAACAAGTTGTCCCTGGGTGTTTCTTGCGAGCTCGTGCTATTGGGCTCATG
genomic: GCACACTCTGTGAGGATAACGACCCCCTGGATGTCCTCATACTGATGCAGgtattttaat ... tttctggaagGAACAAGTTGTCCCTGGGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATG
EST: gi|13126526|gb|BG317096.1|BG317096
EST:     GGATGTCCTCATACTGATGCAG                         GAACAAGTTGTCCCTGGGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATG
genomic: GGATGTCCTCATACTGATGCAGgtattttaat ... tttctggaagGAACAAGTTGTCCCTGGGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATG
EST: gi|9732830|gb|BE511582.1|BE511582
EST:     GCACACTCTGTGAGGATAACGACCCCCTGGATGTCCTCATACTGATGCAG                         GAACAAGTTGTCCCTGGGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATG
genomic: GCACACTCTGTGAGGATAACGACCCCCTGGATGTCCTCATACTGATGCAGgtattttaat ... tttctggaagGAACAAGTTGTCCCTGGGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATG
EST: gi|32851273|gb|CD990954.1|CD990954
EST:     GCACACTCTGTGAGGATAACGACCCCCTGGATGTCCTCATACTGATGCAG                         GAACAAGTTGTCCCTGGGTGTTTCTTGCGAGCTCGTGCTATTGGGCTCATG
genomic: GCACACTCTGTGAGGATAACGACCCCCTGGATGTCCTCATACTGATGCAGgtattttaat ... tttctggaagGAACAAGTTGTCCCTGGGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATG
EST: gi|60354612|gb|DN221585.1|DN221585
EST:     GCACACTCTGTGAGGATAACGACCCCCTGGATGTCCTCATACTGATGCAGAAG                       
genomic: GCACACTCTGTGAGGATAACGACCCCCTGGATGTCCTCATACTGATGC---AGgtattttaat ... tttctgga


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cggtagccttttattatcagctttattctaacattgtgtgctctttttctggaagGAACAAGTTGTCCCTGGGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAG
                         ttctaac  putative branch site (score: 1)
                                    tgtgctctttttct  putative PPT
                     tttattctaacatt  TA-rich tract