1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttataaagaaaatgaactgctacatgatattatcttttgttttggtcatgccatacatgcatgcccccctttgatgttgatatacttatattattgcagACTGACAAAGGCGACGAAGAACTGTGTAGTGTGTATGTGCCAACAAATCATTTGTACATCGGTGATATATTTCTGGTGAACTCTGAGGAGGTCATAAGAC
species | Zea mays |
transcript | GRMZM2G046098_T05 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAATTGGTGAATATGCATTTGGATTCATAACATCAACGGTGGTCCTTCAG ACTGACAAAGGCGACGAANAACTGTGTAGTGTGTATGTGCCAACAAATCATEST: gi|211391866|gb|FL013594.1|FL013594
genomic: GAATTGGTGAATATGCATTTGGATTCATAACATCAACGGTGGTCCTTCAGgtacttgatc ... attattgcagACTGACAAAGGCGACGAAGAACTGTGTAGTGTGTATGTGCCAACAAATCAT
EST: ATTGGTGAATATGCATTTGGGAT-CATAACATCAACGGTGGGTC-TTCAG ACTGACAA-GGCGACGAAGAACTGTGTAGTGTGTATGTGCCCACAA-TCAEST: gi|91053372|gb|EB163790.1|EB163790
genomic: ATTGGTGAATATGCATTTGG-ATTCATAACATCAACGGTGG-TCCTTCAGgtacttgatc ... attattgcagACTGACAAAGGCGACGAAGAACTGTGTAGTGTGTATGTGCCAACAAATCA
EST: GAATTGGTGAATATGCATTTGGATTCATAACATCAACGGTGGTCCTTCAG ACTGACAAAGGCGACGAAGAACTGTGTAGTGTGTATGTGCCAACAAATCATEST: gi|50323815|gb|CO518941.1|CO518941
genomic: GAATTGGTGAATATGCATTTGGATTCATAACATCAACGGTGGTCCTTCAGgtacttgatc ... attattgcagACTGACAAAGGCGACGAAGAACTGTGTAGTGTGTATGTGCCAACAAATCAT
EST: GAATTGGTGAATATGCATTTGGATTCATAACATCAACGGTGGTCCTTCAG ACTGACAAAGGCGACGAAGAACTGTGTAGTGTGTATGTGCCAACAAATCATEST: gi|74239462|gb|DT647376.1|DT647376
genomic: GAATTGGTGAATATGCATTTGGATTCATAACATCAACGGTGGTCCTTCAGgtacttgatc ... attattgcagACTGACAAAGGCGACGAAGAACTGTGTAGTGTGTATGTGCCAACAAATCAT
EST: GAATTGGTGAATATGCATTTGGATTCATAACATCAACGGTGGTCCTTCAG ACTGACAAAGGCGACGAAGAACTGTGTAGTGTGTATGTGCCAACAAATCATEST: gi|60398318|gb|DN231134.1|DN231134
genomic: GAATTGGTGAATATGCATTTGGATTCATAACATCAACGGTGGTCCTTCAGgtacttgatc ... attattgcagACTGACAAAGGCGACGAAGAACTGTGTAGTGTGTATGTGCCAACAAATCAT
EST: GAATTGGTGAATATGCATTTGGATTCATAACATCAACGGTGGTCCTTCAG ACTGACAAAGGCGACGAAGAACTGTGTAGTGTGTATGTGCCAACAAATCATEST: gi|148944675|gb|EC889811.2|EC889811
genomic: GAATTGGTGAATATGCATTTGGATTCATAACATCAACGGTGGTCCTTCAGgtacttgatc ... attattgcagACTGACAAAGGCGACGAAGAACTGTGTAGTGTGTATGTGCCAACAAATCAT
EST: GAATTGGTGAATATGCATTTGGATTCATAACATCAACGGTGGTCCTTCAG ACTGACAAAGGCGACGAAGAACTGTGTAGTGTGTATGTGCCAACAAATCATEST: gi|148949550|gb|EC895017.2|EC895017
genomic: GAATTGGTGAATATGCATTTGGATTCATAACATCAACGGTGGTCCTTCAGgtacttgatc ... attattgcagACTGACAAAGGCGACGAAGAACTGTGTAGTGTGTATGTGCCAACAAATCAT
EST: GAATTGGTGAATATGCATTTGGATTCATAACATCAACGGTGGTCCTTCAG ACTGACAAAGGCGACGAAGAACTGTGTAGTGTGTATGTGCCAACAAATCAT
genomic: GAATTGGTGAATATGCATTTGGATTCATAACATCAACGGTGGTCCTTCAGgtacttgatc ... attattgcagACTGACAAAGGCGACGAAGAACTGTGTAGTGTGTATGTGCCAACAAATCAT
gtcatgccatacatgcatgcccccctttgatgttgatatacttatattattgcagACTGACAAAGGCGACGAAGAACTGTGTAGTGTGTATGTGCCAACAAATCATTTGTACATCGGTGATATATTTCTGGTGAACTCTGAGGAGGTCATAAGAC
tgttgat putative branch site (score: 4)
atgttgatatacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttataaagaaaatgaactgctacatgatattatcttttgttttggtcatgccatacatgcatgcccccctttgatgttgatatacttatattattgcagACTGACAAAGGCGACGAAGAACTGTGTAGTGTGTATGTGCCAACAAATCATTTGTACATCGGTGATATATTTCTGGTGAACTCTGAGGAGGTCATAAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG