1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtattgtctcctctaatccctaattcagttggaattccatttgctttggcactcaggtagttcacaagcatgtgtttcacttgccataatgacttaagtttgtttttctgcagGATGATACTTTAAACCTATATACATATGCTGTTCTGAGGTTAACTCCGCGTGCTTTATATTCCAATGCAAGTTCTTGGTCCTATTTGCGGAAAGGAACTT
species | Zea mays |
transcript | GRMZM2G045944_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATTTGAAGACCTCTTGGTGTCAACAACACTGCCCCCG GATGATACTTTAAACCTATATACATATGCTGTTCTGAGGTTAACTCCGCGTEST: gi|1713310|gb|AA143905.1|AA143905
genomic: ATTTGAAGACCTCTTGGTGTCAACGACACTGCCCCCGgtattgtctc ... ttttctgcagGATGATACTTTAAACCTATATACATATGCTGTTCTGAGGTTAACTCCGCGT
EST: ATCACTTGTACTATTTGAAGACCTCTTNGTGTCAACGAC-CATGCCCCCG GATGATACTTTAAACCTATATACATATGCTGTTCTGAGGTTAACTCCGCGEST: gi|31357930|gb|CD442287.1|CD442287
genomic: ATCACTTGTACTATTTGAAGACCTCTTGGTGTCAACGACAC-TGCCCCCGgtattgtctc ... ttttctgcagGATGATACTTTAAACCTATATACATATGCTGTTCTGAGGTTAACTCCGCG
EST: ATTTGAAGACCTCTTGGTGTCAACGACACTGCCCCCG GATGATACTTTAAACCTATATACATATGCTGTTCTGAGGTTAACTCCGCGT
genomic: ATTTGAAGACCTCTTGGTGTCAACGACACTGCCCCCGgtattgtctc ... ttttctgcagGATGATACTTTAAACCTATATACATATGCTGTTCTGAGGTTAACTCCGCGT
agttcacaagcatgtgtttcacttgccataatgacttaagtttgtttttctgcagGATGATACTTTAAACCTATATACATATGCTGTTCTGAGGTTAACTCCGCGTGCTTTATATTCCAATGCAAGTTCTTGGTCCTATTTGCGGAAAGGAACTT
tttgtttttct CT-rich tract
ttaagtttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgtctcctctaatccctaattcagttggaattccatttgctttggcactcaggtagttcacaagcatgtgtttcacttgccataatgacttaagtttgtttttctgcagGATGATACTTTAAACCTATATACATATGCTGTTCTGAGGTTAACTCCGCGTGCTTTATATTCCAATGCAAGTTCTTGGTCCTATTTGCGGAAAGGAACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA