1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...attgtcataatttatgtgacatgaagttcgtgtgtatcaaaatgcaacttcatattatgtcatgggttgttgaaaattacaaaaaaaaaattattttcagGGTGACTTGCGCACTCACTTGAGTAAGAAAGGAGCTCTGCCACCATCATATGCTGTGAAGTTAGCTCTTGATATTGCAAG
species | Zea mays |
transcript | GRMZM2G045366_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGTGACACAAAGCAATCCAATGATGATTGTCATGGAATTTATGCGCAAG GGTGACTTGCGCACTEST: gi|71448903|gb|DR829953.1|DR829953
genomic: CTGTGACACAAAGCAATCCAATGATGATTGTCATGGAATTTATGCGCAAGgtttgtctta ... ttattttcagGGTGACTTGCGCACT
EST: CTGTGACACAAAGCAATCCAATGATGATTGTCATGGAATTTATGCGCAAG GGTGACTTGCGCACTCACTTGAGTAAGAAAGGAGCTCTGCCCAC-ATCATAEST: gi|78080255|gb|DV508667.1|DV508667
genomic: CTGTGACACAAAGCAATCCAATGATGATTGTCATGGAATTTATGCGCAAGgtttgtctta ... ttattttcagGGTGACTTGCGCACTCACTTGAGTAAGAAAGGAGCTCTGCC-ACCATCATA
EST: CTGTGACACAAAGCAATCCAATGATGATTGTCATGGAATTTATGCGCAAG GGTGACTTGCGCACTCACTTGAGTAAGAAAGGAGCTCTGCEST: gi|76287394|gb|DV026962.1|DV026962
genomic: CTGTGACACAAAGCAATCCAATGATGATTGTCATGGAATTTATGCGCAAGgtttgtctta ... ttattttcagGGTGACTTGCGCACTCACTTGAGTAAGAAAGGAGCTCTGC
EST: CTGTGACACAAAGCAATCCAATGATGATTGTCATGGAATTTATGCGCAAG GGTGACTTGCGCACTCACTTGAGTAAGAAAGGAGCTCTGCCACCATCATAT
genomic: CTGTGACACAAAGCAATCCAATGATGATTGTCATGGAATTTATGCGCAAGgtttgtctta ... ttattttcagGGTGACTTGCGCACTCACTTGAGTAAGAAAGGAGCTCTGCCACCATCATAT
aacttcatattatgtcatgggttgttgaaaattacaaaaaaaaaattattttcagGGTGACTTGCGCACTCACTTGAGTAAGAAAGGAGCTCTGCCACCATCATATGCTGTGAAGTTAGCTCTTGATATTGCAAG
ttattttc CT-rich tract
ttgttgaaaattacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgtcataatttatgtgacatgaagttcgtgtgtatcaaaatgcaacttcatattatgtcatgggttgttgaaaattacaaaaaaaaaattattttcagGGTGACTTGCGCACTCACTTGAGTAAGAAAGGAGCTCTGCCACCATCATATGCTGTGAAGTTAGCTCTTGATATTGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - tgacatg
- - - - - - - - - - - - - - - -gtgtatc
- - - - - - - - - - - - - - - - - - - - aatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - ttcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa