Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcctcagctgccagcagtctatatctatacccacacacagcagaagtgaagtttaggtcacttcagagttcagagctacgtacgtacgtgatgagtgtcacagtgtgtgtacaaatgggccggttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCTGGTGGCGACGCTGTACGTGCTGACGCTGACGCTGCCGTCCGCCTCCGCC

Basic information

species Zea mays
transcript GRMZM2G045057_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G045057_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA04G00640.1 (Glycine max), 3'ss of exon 5
gtaagcctcagctgccagcagtctatatctatacccacacacagcagaagtgaagtttaggtcacttcagagttc--agagctacgtacgtacgtgatgagtgtcacagtgtgtgtacaa-atgggccggttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCTGGTGGCGACGCTGTACGTGCTGACGCTGACGCTGCCGTCCGCCTCCGCC
                                    |   | || ||||  |||   ||  |  ||| | |||||   |   |     | ||       |  || |    | |  ||  |  || || ||| |   ||||||||| |||||||||||||||||||| || || ||||||  ||| ||| |  |||| || ||||| ||| ||||  |||| || || || ||  | || 
------------------------------------aattataggagaaaagaaaaata--ttccttaaaagttcctggtatttttctcttaaaaacaaaaagtaaattggagaataagacgtgtgctggt-gacacagGGAGATAATGCACGCGATGTGGAAACCTCAAAAATTCAAGGCCATATACTTACTGGCTACCCTGTATGTGATGACATTGACTCTCCCATCGGCAGCTGCA

upper sequence: GRMZM2G045057_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA06G00690.1 (Glycine max), 3'ss of exon 5
gtaagcctcagctgccagcagtctatatctatacccacacacagcagaagtgaagtttaggtcacttcagagttcagagctacgtacgtacgtgatgagtgtcacagtgtgtgtacaaatgggccggttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCTGGTGGCGACGCTGTACGTGCTGACGCTGACGCTGCCGTCCGCCTCCGCC
                          |    | |  | ||   ||     ||   |||  ||   |  | |  |   |   |  | | | |  | | | ||    ||||  |  | |  || |  ||| ||  ||||||||| |||||||||||||||||||| || || ||||||  ||| ||| |  | || || ||||| ||| ||||  |||| || || || ||  | || 
--------------------------aatattccttaaactttgc-----tggtttttttgttgttaaaaaaat---aatgatattcttccaagttaattgctggagtgaata-agacgtgtgttggt-ggcacagGGAGATAATGCACGCGATGTGGAAACCTCAAAAATTCAAGGCCATATACTTACTTGCTACCCTGTATGTGATGACATTGACTCTTCCATCGGCAGCTGCA

upper sequence: GRMZM2G045057_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA11G11310.1 (Glycine max), 3'ss of exon 5
gtaagcctcagctgccagcagtctatatctatacccacacacagcagaagtgaagtttaggtcacttcagagttcagagctacgtacgtacgtgatgagtgtcacagtgtgtgtacaaatgggccggttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCTGGTGGCGACGCTGTACGTGCTGACGCTGACGCTGCCGTCCGCCTCCGCC
                              |||  |    |    |  ||| || |||  |  |  | | ||||    ||||  ||   | | ||  | | |   | || |     || ||  | |||     ||||||||| ||||||||||||||||| || || |||||||||  | | ||| |  |||| || ||||| |||||||| |||||||| || || ||  | || 
---------------------------gtgatatgctgctaattaattagttaattttgagagaaatga-agtt---ggctagctagtaatgagacaaatatattaatgag-----aattgtactggtaacaccagGGAGATAATGCACGCGATGTGGAAGCCTCAAAAGTTCAAGGCCTTATACTTACTGGCAACCCTGTATGTGCTGACACTGACGCTTCCATCGGCAGCAGCA

upper sequence: GRMZM2G045057_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA12G03490.1 (Glycine max), 3'ss of exon 5
gtaagcctcagctgccagcagtctatatctatacccacacacagcagaagtgaagtttaggtcacttcagagttcagagctacgtacgtacgtgatgagtgtcacagtgtgtgtacaaatgggccggttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCTGGTGGCGACGCTGTACGTGCTGACGCTGACGCTGCCGTCCGCCTCCGCC
                     | ||||  | ||  |     ||   |  ||||    || |  |||    | ||   || | ||   |||   ||  | | |   | ||     | |  ||  | |||     ||||||||| ||||||||||||||||| || || |||||||||  | | ||| |  |||| || ||||| |||||||| |||||||| || || ||  | || 
--------------------atttataatt-taagcttttgcaattgtggtga----tatgctactaattaatt---agtttcgagagtataagacaaatatattaatg-----atacttgtactggta---acagGGAGATAATGCACGCGATGTGGAAGCCTCAAAAGTTCAAGGCCTTATACTTACTGGCAACCCTGTATGTGCTGACACTGACGCTTCCATCGGCAGCAGCA

upper sequence: GRMZM2G045057_T02 (Zea mays), 3'ss of exon 5
lower sequence: AT1G77690.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaagcctcagctgccagcagtctatatctatacccacacacagcagaagtgaagtttaggtcacttcagagttcagagctacgtacgtacgtgatgagtgtcacagtgtgtgtacaaatgggccggttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCTGGTGGCGACGCTGTACGTGCTGACGCTGACGCTGCCGTCCGCCTCCGCC
                                               |||| |  |||   |   ||   |    | |    | ||  ||  ||       | |   ||| |    || | |      |     |||||||| |||||||| |||||||||||||| |||||||||   || || ||  | |||||  | || || || ||||| ||||| || ||||| || || 
---------------------------------------------gtaagt-attttttttttgtttggaaaaataaaatggcttaatta-atggcttaactaattatgtattggaaatttgaaaaaatataatagGGAGATAATGCACGCTATGTGGAAACCGCAAAAGTTCAAGGCGATATATCTACTAGCGACCATATATGTACTAACGCTAACGCTACCATCCGCGTCTGCG

upper sequence: GRMZM2G045057_T02 (Zea mays), 3'ss of exon 5
lower sequence: AT2G21050.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaagcctcagctgccagcagtctatatctatacccacacacagcagaagtgaagtttaggtcacttcagagttcagagctacgtacgtacgtgatgagtgtcacagtgtgtgtacaaatgggccggttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCTGGTGGCGACGCTGTACGTGCTGACGCTGACGCTGCCGTCCGCCTCCGCC
||| |       |          | || |   | |  ||  || || |    |||  ||    |  |   | | |||||  | | |  |      | | | |||  || |||||        |   |||||  ||| ||||| ||||| || ||||||||||| || |||||||||  ||| |||||| | || || || |||||||||||||| |||||||| || || || || 
gtatgttctcttttttttacccttttaaccccatcaccattca-catatcctaagggta---taactggaattacagagtaatgaaaatgaccactcactttcattgtttgtgtgtt-----gtttgttgg--cagAGAGATAATGCATGCTATGTGGAAACCTCAGAAGTTCAAGTCCATATACCTGTTTGCAACACTCTACGTGCTGACGCTAACGCTGCCTTCTGCGTCTGCG

upper sequence: GRMZM2G045057_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv03s0038g02140.t01 (Vitis vinifera), 3'ss of exon 5
gtaagcctcagctgccagcagtctatatctatacccacacacagcagaagtgaagtttaggtcacttcagagttcagagctacgtacgtacgtgatgagtgtcacagtgtgtgtacaaatgggccggttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCTGGTGGCGACGCTGTACGTGCTGACGCTGACGCTGCCGTCCGCCTCCGCC
                     |  | | |  |  ||||  |   || || |  | ||   ||   |  | | |||  |   | ||   ||            || |  ||         | |     ||  ||||| ||||| ||||| || ||||||||||| || || ||||||  ||| |||||| |||| ||  |||| |||||||| ||||| || ||||||||  | || 
------------------ttttgaaaaacagtttccacttattccaaaattttaattattgt--ttagaaaattctaaatcaagtgtataaaaa--------cataaggt--------tttgatttttttttgcagAGAGATAATGCATGCAATGTGGAAACCACAGAAATTCAAGGCCATATACCTGCTGGCTACCGTGTATGTGCTGACACTGACACTTCCGTCCGCGGCAGCA

upper sequence: GRMZM2G045057_T02 (Zea mays), 3'ss of exon 5
lower sequence: PP1S213_89V6.1 (Physcomitrella patens), 3'ss of exon 5
------------gtaagcctcagctgccagcagtctat-atctatacccacacacagcagaagtgaagtttaggtcacttcagagttcagagctacgtacgtacgtgatgagtgtcacagtgtgtgtacaaatgggccggttggtg----cagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCTGGTGGCGACGCTGTACGTGCTGACGCTGACGCTGCCGTCCGCCTCCGCC
            |  |||  |  || |      ||| | | |  |   ||  |  | |     |  | ||| | ||     |   |  |  |  ||  ||  | |   | || |  | |    |    ||||    |   ||  |     |||||||||||||||||| ||||  |||||   ||||||||||  | | | |||| ||||||||||||||||| | ||||||||  | || |||||    || 
gtaagtaaaaaagggagctcctcctcctgctcctctctcaacggttttcatcccaatcgttcctcgatttttgttccagcaattttgtattgtcactcactgaggc--tcagagagaaaaaaggccctcaaacttcctaattactattgccagGGAGATCATGCACGCCATGTACAAACCCAGCAAGTTCAAGTACGTTTTCCTGTTGGCGACGCTGTACGTGTTCACGCTGACAATCCCCTCCGCAGTGGCA

upper sequence: GRMZM2G045057_T02 (Zea mays), 3'ss of exon 5
lower sequence: EFJ34222 (Selaginella moellendorffii), 3'ss of exon 5
gtaagcctcagctgccagcagtctatatctatacccacacacagcagaagtgaagtttaggtcacttcagagttcagagctacgtacgtacgtgatgagtgtcacagtgtgtgtacaaatgggccggttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCTGGTGGCGACGCTGTACGTGCTGACGCTGACGCTGCCGTCCGCCTCCGCC
                                                 || |  ||| | |   |||   ||||     | | |   |    |||  |  ||      |    | |||      | |     ||||||||||||||||||||||||||| || || |||||||||    |||| || || || ||  | |||||  | ||  |||| || ||||||||| | || 
-------------------------------------------------gtaagctttcgcttctttcgctgttc----ttgcatggat---cgataggcatc------ttctcataaact--ttgatcttcccagGGAGATCATGCACGCGATGTGGAAGCCCCAAAAGTTCAAGTGGGTCTATCTCGTCGCTACCATCTACGTCTTCACCTTGACACTCCCGTCCGCCACGGCA

upper sequence: GRMZM2G045057_T02 (Zea mays), 3'ss of exon 5
lower sequence: EFJ21839 (Selaginella moellendorffii), 3'ss of exon 5
gtaagcctcagctgccagcagtctatatctatacccacacacagcagaagtgaagtttaggtcacttcagagttcagagctacgtacgtacgtgatgagtgtcacagtgtgtgtacaaatgggccggttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCTGGTGGCGACGCTGTACGTGCTGACGCTGACGCTGCCGTCCGCCTCCGCC
                                                 || |  ||| | |   |||   ||||     | | |   |   |      |||     | | |   || |      | |     ||||||||||||||||||||||||||| || || |||||||||    |||| || || || ||  | |||||  | ||  |||| || ||||||||| | || 
-------------------------------------------------gtaagctttcgcttctttcgctgttc----ttgcatggatcgataggctatgttgtcatcttttctcataaactttgatcttcccagGGAGATCATGCACGCGATGTGGAAGCCCCAAAAGTTCAAGTGGGTCTATCTCGTCGCTACCATCTACGTCTTCACCTTGACACTCCCGTCCGCCACGGCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78112333|gb|DV530727.1|DV530727
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|71764011|gb|DR961948.1|DR961948
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|50328669|gb|CO523795.1|CO523795
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|78082524|gb|DV510936.1|DV510936
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|76288759|gb|DV028327.1|DV028327
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|91874194|gb|EB404151.1|EB404151
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|71758159|gb|DR956096.1|DR956096
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|148950657|gb|EC896243.2|EC896243
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|78120350|gb|DV538734.1|DV538734
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|74238571|gb|DT646485.1|DT646485
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|74233955|gb|DT641869.1|DT641869
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|148934104|gb|EC878118.2|EC878118
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|76926808|gb|DV171015.1|DV171015
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|149082574|gb|EE171769.2|EE171769
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|71767925|gb|DR965862.1|DR965862
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|78089315|gb|DV517689.1|DV517689
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|76917088|gb|DV166674.1|DV166674
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|76010505|gb|DT937675.1|DT937675
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|93283664|gb|EB675928.1|EB675928
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|78107103|gb|DV525521.1|DV525521
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|50327191|gb|CO522317.1|CO522317
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|91869460|gb|EB400396.1|EB400396
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|76010835|gb|DT938005.1|DT938005
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|71444735|gb|DR825785.1|DR825785
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|94474307|gb|EB703265.1|EB703265
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|148959931|gb|EE153170.2|EE153170
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|88748025|gb|DY532166.1|DY532166
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|78088592|gb|DV516985.1|DV516985
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|78125247|gb|DV543631.1|DV543631
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|148966351|gb|EE017338.2|EE017338
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|149098688|gb|EE184698.2|EE184698
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|76922170|gb|DV168885.1|DV168885
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|78076145|gb|DV504579.1|DV504579
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|86472772|gb|DY239142.1|DY239142
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|149039683|gb|EE046669.2|EE046669
EST:     CCGGTGCCACCAACATCCCTCTACACCTTTGGAGGGCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: CCGGTGCCACCAACAT-CCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|76021210|gb|DT948380.1|DT948380
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|71758786|gb|DR956723.1|DR956723
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|149095643|gb|EE181265.2|EE181265
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|76016574|gb|DT943744.1|DT943744
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|86465793|gb|DY232166.1|DY232166
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|50330173|gb|CO525299.1|CO525299
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|76280995|gb|DV020563.1|DV020563
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|86470112|gb|DY236482.1|DY236482
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|89252694|gb|DY624480.1|DY624480
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|76010802|gb|DT937972.1|DT937972
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|71301533|gb|DR786807.1|DR786807
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|71769396|gb|DR967333.1|DR967333
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|86470985|gb|DY237355.1|DY237355
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|91050270|gb|EB160688.1|EB160688
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
EST: gi|149095642|gb|EE181264.2|EE181264
EST:     ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGT                         GGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT
genomic: ACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 31 (upstream exon), 44 (downstream exon)
Score: 4

GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCTGGTGGCGACGCTGTACGTGCTGACGCTGACGCTGCCGTCCGCCTCCGCC


Block sizes: 44 (upstream exon), 46 (downstream exon)
Score: 14

GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCTGGTGGCGACGCTGTACGTGCTGACGCTGACGCTGCCGTCCGCCTCCGCC


Block sizes: 46 (upstream exon), 48 (downstream exon)
Score: 7

GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCTGGTGGCGACGCTGTACGTGCTGACGCTGACGCTGCCGTCCGCCTCCGCC


Block sizes: 48 (upstream exon), 47 (downstream exon)
Score: 8

GTGGAAGGTGTGACGCACTCGGGCCCAAGCAAGATGGTGCTCTACTTCACCGGTGCCACCAACATCCTCTACACCTTTGGAGGCCATGCTGTCACTGTgtaagcctca ... gttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCTGGTGGCGACGCTGTACGTGCTGACGCTGACGCTGCCGTCCGCCTCCGCC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgtacgtacgtgatgagtgtcacagtgtgtgtacaaatgggccggttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCTGGTGGCGACGCTGTACGTGCTGACGCTGACGCTGCCGTCCGCCTCCGCC
                                tacaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagcctcagctgccagcagtctatatctatacccacacacagcagaagtgaagtttaggtcacttcagagttcagagctacgtacgtacgtgatgagtgtcacagtgtgtgtacaaatgggccggttggtgcagGGAGATCATGCACGCGATGTGGAAACCGCACAAGTTCAAGCTCATCTACCTGGTGGCGACGCTGTACGTGCTGACGCTGACGCTGCCGTCCGCCTCCGCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG