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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaaattgtctgttttcgtatccattgtcatggtgcatctgtattattgttgatgtttcattttagctatttacagatgaacttattatgcctttgataaaaaatgactgtttgaaatgtagGTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACTGCTCATCCTTCAACGACAACCAGGATCCATGCCTAGCTGGGTGCCGGAA

Basic information

species Zea mays
transcript GRMZM2G044569_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044569_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os08g29590.1 (Oryza sativa), 3'ss of exon 5
--------------------------gtaagcaaattgtctgttttcgtatccattgtcatggtgcatctgtattattgttgatgt----ttcattttagct-atttacagatgaacttattatgcctttgataaaaaatgactgtttgaaatgtagGTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACTGCTCATCCTTCAACGACAACCAGGATCCATGCCTAGCTGGGTGCCGGAA
                                 |||  || || ||   ||| || | ||||   ||| ||    ||   || |||    | | | |||  | | | | |||  | ||  | |||       | |  |    |  |||| | |  ||||||||| |||||||||||||| || |||||||||||| ||||| | || || || |||||||| || ||||| || |||||||||||||||||||||||
gtataccaatcacatccttccttatacctgatgaatcctc-gtgttgagatcgat-gacatga-acatttgatggatccatggtgtggaatacgtattactttactgagagaatatctcttaatgttacctgtgatgatgatccctttgtattccagGTGTTGTTGTTTTCTTTGTGCTACTCGGATTCTTCGGGTTGATACTGCATTGTTCGTCCTTCAATGATAACCAAGACCCATGCCTAGCTGGGTGCCGGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47962587|gb|CN845296.1|CN845296
EST:     TTGGGACCGCTTCTTGTCAAAGCACCCAGTACCCTTCTACTATTGCATAG                         GTGTTGTGATTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACT
genomic: TTGGGACCGCTTCTTGTCAAAGCACCCAATACCCTTCTACTATTGCATAGgtaagcaaat ... tgaaatgtagGTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACT
EST: gi|78085525|gb|DV513918.1|DV513918
EST:     TTGGGACCGCTTCTTGTCAAAGCACCCAATACCCTTCTACTATTGCATAG                         GTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCCGGCTGATAGTACA
genomic: TTGGGACCGCTTCTTGTCAAAGCACCCAATACCCTTCTACTATTGCATAGgtaagcaaat ... tgaaatgtagGTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACA
EST: gi|71766873|gb|DR964810.1|DR964810
EST:     TTGGGACCGCTTCTTGTCAAAGCACCCAATACCCTTCTACTATTGCATAG                         GTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACT
genomic: TTGGGACCGCTTCTTGTCAAAGCACCCAATACCCTTCTACTATTGCATAGgtaagcaaat ... tgaaatgtagGTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACT
EST: gi|71764260|gb|DR962197.1|DR962197
EST:     TTGGGACCGCTTCTTGTCAAAGCACCCAATACCCTTCTACTATTGCATAG                         GTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACT
genomic: TTGGGACCGCTTCTTGTCAAAGCACCCAATACCCTTCTACTATTGCATAGgtaagcaaat ... tgaaatgtagGTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACT
EST: gi|71449470|gb|DR830520.1|DR830520
EST:     TTGGGACCGCTTCTTGTCAAAGCACCCAATACCCTTCTACTATTGCATAG                         GTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACT
genomic: TTGGGACCGCTTCTTGTCAAAGCACCCAATACCCTTCTACTATTGCATAGgtaagcaaat ... tgaaatgtagGTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACT
EST: gi|78075719|gb|DV504153.1|DV504153
EST:     TTGGGACCGCTTCTTGTCAAAGCACCCAATACCCTTCTACTATTGCATAG                         GTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACT
genomic: TTGGGACCGCTTCTTGTCAAAGCACCCAATACCCTTCTACTATTGCATAGgtaagcaaat ... tgaaatgtagGTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACT
EST: gi|78085425|gb|DV513818.1|DV513818
EST:     TTGGGACCGCTTCTTGTCAAAGCACCCCATACCCTTCTACTATTGCATAG                         GTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTG
genomic: TTGGGACCGCTTCTTGTCAAAGCACCCAATACCCTTCTACTATTGCATAGgtaagcaaat ... tgaaatgtagGTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTG
EST: gi|37621915|gb|CF674968.1|CF674968
EST:     TTGGGACCGCTTCTTGTCAAAGCACCCAATACCCTTCTACTATTGCATAG                         GTGTTGTGATTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACT
genomic: TTGGGACCGCTTCTTGTCAAAGCACCCAATACCCTTCTACTATTGCATAGgtaagcaaat ... tgaaatgtagGTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACT
EST: gi|60352003|gb|DN218976.1|DN218976
EST:     TTGGGACCGCTTCTTGTCAAAGCACCCAATACCCTTCTACTATTGCATAG                         GTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACT
genomic: TTGGGACCGCTTCTTGTCAAAGCACCCAATACCCTTCTACTATTGCATAGgtaagcaaat ... tgaaatgtagGTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACT
EST: gi|91875640|gb|EB405597.1|EB405597
EST:     TTGGGACCGCTTCTTGTCAAAGCACCCAATACCCTTCTACTATTGCATAG                         GTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACT
genomic: TTGGGACCGCTTCTTGTCAAAGCACCCAATACCCTTCTACTATTGCATAGgtaagcaaat ... tgaaatgtagGTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACT
EST: gi|76287272|gb|DV026840.1|DV026840
EST:     TTGGGACCGCTTCTTGTCAAAGCACCCAATACCCTTCTACTATTGCATAG                         GTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACT
genomic: TTGGGACCGCTTCTTGTCAAAGCACCCAATACCCTTCTACTATTGCATAGgtaagcaaat ... tgaaatgtagGTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACT
EST: gi|211220736|gb|FL455232.1|FL455232
EST:     TTGGGACCGCTTCTTGTCAAAGCACCCAATACCCTTCTACTATTGCATAG                         GTGTTGTGATTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACT
genomic: TTGGGACCGCTTCTTGTCAAAGCACCCAATACCCTTCTACTATTGCATAGgtaagcaaat ... tgaaatgtagGTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACT
EST: gi|67013125|gb|CO441874.1|CO441874
EST:     TTGGGACCGCTTCTTGTCAAAGCACCCAATACCCTTCTACTATTGCATAG                         GTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACT
genomic: TTGGGACCGCTTCTTGTCAAAGCACCCAATACCCTTCTACTATTGCATAGgtaagcaaat ... tgaaatgtagGTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACT
EST: gi|91877669|gb|EB407626.1|EB407626
EST:     GGGGGACCGCTTCTTGTCAAAGCACCCAATACCCTTCTACTATTGCATAG                         GTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACT
genomic: -TGGGACCGCTTCTTGTCAAAGCACCCAATACCCTTCTACTATTGCATAGgtaagcaaat ... tgaaatgtagGTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACT
EST: gi|76287271|gb|DV026839.1|DV026839
EST:     TTGGGACCGCTTCTTGTCAAAGCACCCAATACCCTTCTACTATTGCATAG                         GTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACT
genomic: TTGGGACCGCTTCTTGTCAAAGCACCCAATACCCTTCTACTATTGCATAGgtaagcaaat ... tgaaatgtagGTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACT
EST: gi|60350312|gb|DN217285.1|DN217285
EST:     TTGGGACCGCTTCTTGTCAAAGCACCCAATACCCTTCTACTATTGCATAG                         GTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACT
genomic: TTGGGACCGCTTCTTGTCAAAGCACCCAATACCCTTCTACTATTGCATAGgtaagcaaat ... tgaaatgtagGTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACT
EST: gi|67025393|gb|CO454142.1|CO454142
EST:     TTGGGACCGCTTCTTGTCAA-GCACCCAATACCCTTCTACTATTGCATAG                         GTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTATACT
genomic: TTGGGACCGCTTCTTGTCAAAGCACCCAATACCCTTCTACTATTGCATAGgtaagcaaat ... tgaaatgtagGTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACT
EST: gi|74242906|gb|DT650820.1|DT650820
EST:     TGGGGACCGCTTCTTGTCAAAGCACCCAATACCCTTCTACTATTGCATAG                         GTGTTGGGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACT
genomic: T-GGGACCGCTTCTTGTCAAAGCACCCAATACCCTTCTACTATTGCATAGgtaagcaaat ... tgaaatgtagGTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACT
EST: gi|211122360|gb|FL034211.1|FL034211
EST:     TTGGGACCGCTTCTTGTCAAAGCACCCAATACCCTTCTACTATTGCATAG                         GTGTTGTGGTTTTCTTTG
genomic: TTGGGACCGCTTCTTGTCAAAGCACCCAATACCCTTCTACTATTGCATAGgtaagcaaat ... tgaaatgtagGTGTTGTGGTTTTCTTTG
EST: gi|78085524|gb|DV513917.1|DV513917
EST:     AAAGCACCCAATACCCTTCTACTTTTGCATAG                         GTGTTGGGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACT
genomic: AAAGCACCCAATACCCTTCTACTATTGCATAGgtaagcaaat ... tgaaatgtagGTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACT
EST: gi|21395209|gb|BQ539639.1|BQ539639
EST:     CTACTATTGCATAG                         GTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACT
genomic: CTACTATTGCATAGgtaagcaaat ... tgaaatgtagGTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttacagatgaacttattatgcctttgataaaaaatgactgtttgaaatgtagGTGTTGTGGTTTTCTTTGTGCTGCTTGGATTCTTCGGGCTGATAGTACACTGCTCATCCTTCAACGACAACCAGGATCCATGCCTAGCTGGGTGCCGGAA
                        ctttgat  putative branch site (score: 5)
                         tttgataaaaaatga  TA-rich tract