1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gagaacttatgaaataggtatttataattgtttaaatcaactgacttgtgtgctgctgtcaacaattaaccttgaattgctcgctaacattttggaacagAACCTATCGAATAGGCAAAAACCTGGATGTGGAAAGGGTTCTGCCGTGGACCGATCAAGAGAGCAAACTACTGG
species | Zea mays |
transcript | GRMZM2G044527_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGAAAATTGCTCGTCAGGCAAAGACAAAAGTTGATGAACTGGAAAGAGAT AACCTATCGAATAGGCAAAAACCTGGATG-GGAAAGGGTTCTGCCGTGGACEST: gi|78119539|gb|DV537923.1|DV537923
genomic: GGAAAATTGCTCGTCAGGCAAAGACAAAAGTTGATGAACTGGAAAGAGATgtatgctctt ... tttggaacagAACCTATCGAATAGGCAAAAACCTGGATGTGGAAAGGGTTCTGCCGTGGAC
EST: GGAAAATTGCTCGTCAGGCAAAGACAAAAGTTGATGAACTGGAAAGAGAT AACCTATCGAATAGGCAAAAACCTGGATGTGGAAAGGGTTCTGCCGTGGACEST: gi|148932260|gb|EC875796.2|EC875796
genomic: GGAAAATTGCTCGTCAGGCAAAGACAAAAGTTGATGAACTGGAAAGAGATgtatgctctt ... tttggaacagAACCTATCGAATAGGCAAAAACCTGGATGTGGAAAGGGTTCTGCCGTGGAC
EST: GGAAAATTGCTCGTCAGGCAAAGACAAAAGTTGATGAACTGGAAAGAGAT AACCTATCGAATAGGCAAAAACCTGGATGTGGAAAGGGTTCTGCCGTGGAC
genomic: GGAAAATTGCTCGTCAGGCAAAGACAAAAGTTGATGAACTGGAAAGAGATgtatgctctt ... tttggaacagAACCTATCGAATAGGCAAAAACCTGGATGTGGAAAGGGTTCTGCCGTGGAC
ttgtgtgctgctgtcaacaattaaccttgaattgctcgctaacattttggaacagAACCTATCGAATAGGCAAAAACCTGGATGTGGAAAGGGTTCTGCCGTGGACCGATCAAGAGAGCAAACTACTGG
cgctaac putative branch site (score: 2)
aacaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagaacttatgaaataggtatttataattgtttaaatcaactgacttgtgtgctgctgtcaacaattaaccttgaattgctcgctaacattttggaacagAACCTATCGAATAGGCAAAAACCTGGATGTGGAAAGGGTTCTGCCGTGGACCGATCAAGAGAGCAAACTACTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - aatcaac
- - - - - - - - - - - - - - - - - - - - - - - - - -gctgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caacaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctcgc