1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtttgtttgcatggtttaacattaataatttaatatgcattactaaagattatgggatgaagcctaaattcatttgatttgttttacacaccatttttagtttaccagaaccttgacagttcaattttgcagGGGATTGAGATGCTGTCATTGGGATCATTTAAAACTGGAGCCATTCTCTTG
species | Zea mays |
transcript | GRMZM2G044348_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGAAGCATTGGCTTGCAAACAATGTCCTGGGATTGGCTTTCTGTATTCAG GGGATTGAGATGCTGTCATTGGGATCATTTAAAACTGGAGCCATTCTCTTGEST: gi|94475589|gb|EB704547.1|EB704547
genomic: AGAAGCATTGGCTTGCAAACAATGTCCTGGGATTGGCTTTCTGTATTCAGgtttgtttgc ... aattttgcagGGGATTGAGATGCTGTCATTGGGATCATTTAAAACTGGAGCCATTCTCTTG
EST: CATTGGCTTGCAAACAATGTCCTGGGATTGGCTTTCTGTATTCAG GGGATTGAGATGCTGTCATTGGGATCATTTAAAACGGGAGCCATTCTCTTGEST: gi|7137682|gb|AW499217.1|AW499217
genomic: CATTGGCTTGCAAACAATGTCCTGGGATTGGCTTTCTGTATTCAGgtttgtttgc ... aattttgcagGGGATTGAGATGCTGTCATTGGGATCATTTAAAACTGGAGCCATTCTCTTG
EST: AGAAGCATTGGCTTGCAAACAATGTCCTGGGATTGGCTTTCTGTATTCAG GGGATTGAGATGCTGTCATTGGGATCATTTAAAACTGGAGCCATTCTCTTGEST: gi|67018214|gb|CO446963.1|CO446963
genomic: AGAAGCATTGGCTTGCAAACAATGTCCTGGGATTGGCTTTCTGTATTCAGgtttgtttgc ... aattttgcagGGGATTGAGATGCTGTCATTGGGATCATTTAAAACTGGAGCCATTCTCTTG
EST: AGAAGCATTGGCTTGCAAACAATGTCCTGGGATTGGCTTTCTGTATTCAG GGGATTGAGATGCTGTCATTGGGATCATTTAAAACTGGAGCCATTCTCTTGEST: gi|148944600|gb|EC889730.2|EC889730
genomic: AGAAGCATTGGCTTGCAAACAATGTCCTGGGATTGGCTTTCTGTATTCAGgtttgtttgc ... aattttgcagGGGATTGAGATGCTGTCATTGGGATCATTTAAAACTGGAGCCATTCTCTTG
EST: AGAAGCATTGGCTTGCAAACAATGTCCTGGGATTGGCTTTCTGTATTCAG GGGATTGAGATGCTGTCATTGGGATCATTTAAAACTGGAGCCATTCTCTTGEST: gi|149100816|gb|EE186910.2|EE186910
genomic: AGAAGCATTGGCTTGCAAACAATGTCCTGGGATTGGCTTTCTGTATTCAGgtttgtttgc ... aattttgcagGGGATTGAGATGCTGTCATTGGGATCATTTAAAACTGGAGCCATTCTCTTG
EST: CCTGGGATTGGCTTTCTGTATTCAG GAGATTGAGATGCTGTCATTGGGATCATTTAAAACTGGAGCCATTCTCTTG
genomic: CCTGGGATTGGCTTTCTGTATTCAGgtttgtttgc ... aattttgcagGGGATTGAGATGCTGTCATTGGGATCATTTAAAACTGGAGCCATTCTCTTG
tttgttttacacaccatttttagtttaccagaaccttgacagttcaattttgcagGGGATTGAGATGCTGTCATTGGGATCATTTAAAACTGGAGCCATTCTCTTG
ccttgac putative branch site (score: 4)
atttttagttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtttgcatggtttaacattaataatttaatatgcattactaaagattatgggatgaagcctaaattcatttgatttgttttacacaccatttttagtttaccagaaccttgacagttcaattttgcagGGGATTGAGATGCTGTCATTGGGATCATTTAAAACTGGAGCCATTCTCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG