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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagactttggcctctaatagaactgctgaggacttggatcttcatgcttaacactgtacaactgcagtttttggccttttcctgtttgcttcgtgaagtgatttttgttttcatgttttagGCTGTGAAAGACAAATTGAGCCAAGTTGCACGTTCCATTGGTCAATCTGCCAGTGGTATGCATAATTTGATATTGCCACTGTCTTCGCTCAATTTATTGC

Basic information

species Zea mays
transcript GRMZM2G044317_T04
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044317_T04 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os07g22400.1 (Oryza sativa), 3'ss of exon 5
gtatagactttggcctctaatagaactgctgaggacttggatct-tcatgcttaacactgtacaactgcagtttttggccttt--tcctgtttgct-tcgtgaagtgatttttgttttcatgtttt-agGCTGTGAAAGACAAATTGAGCCAAGTTGCACGTTCCATTGGTCAATCTGCCAGTGGTATGCATAATTTGATATTGCCACTGTCTTCGCTCAATTTATTGC
                                      | || | | ||| | | | ||||  |  || |  ||   |  ||   |  | ||| |  | ||||  || || ||||||||| ||||| ||||||| |||||||| |||||||||||||||||  ||||||||||||||||   ||                                             
--------------------------------------gtatgtgttatggtca-ctctgttgacttggaccttgatgatttcagtaatatttacagtagtgagatg-ttcttgttttcacgtttttagGCTGTCAAAGACAAGTTGAGCCAAGTTGCACGCACCATTGGTCAATCTGCAGCTG---------------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttttggccttttcctgtttgcttcgtgaagtgatttttgttttcatgttttagGCTGTGAAAGACAAATTGAGCCAAGTTGCACGTTCCATTGGTCAATCTGCCAGTGGTATGCATAATTTGATATTGCCACTGTCTTCGCTCAATTTATTGC
                                   tttttgttttc  CT-rich tract
                                  atttttgttttcat  TA-rich tract