Sequence
atgc intronic sequence ATGC exonic sequence...tatgctttttattggttgaataggagtgggttggttgcttgaacttgcaccttcctgatctctgcatgaaaactattgattgatttgcttcgttcaatagGTTCATATGGAGAGATTTACTGTGCTGACTGGAATGGAACC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G044180_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os03g06410.1 (Oryza sativa), 3'ss of exon 4
-------------------------------------------------------------------------------------tatgctttttattggttgaataggagtgggttggttgcttgaacttgcaccttcctgatctctgcatgaaaactattgattgatttgcttcgttcaatagGTTCATATGGAGAGATTTACTGTGCTGACTGGAATGGAACC
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gtatttttcctcaactaagattttgacatgatccttgcttctctatacattaacaagttgaaccgacaaatctttaacaatttgtcaaactatattattatagctcagccatgtgtaaactcattgcactatctgatgccaatttgttgcacaaacttgaaccaacttcttcctcctcccaacagGTTCATATGGAGAGGTGTACCGTGCTGATTGGAATGGAACA
upper sequence: GRMZM2G044180_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA10G30070.1 (Glycine max), 3'ss of exon 5
tatgctttttattggtt--gaataggagtgggttggttgcttgaacttgcaccttcctgatctctgcatgaaaactattgattgatttgcttcgttcaatagGTTCATATGGAGAGATTTACTGTGCTGACTGGAATGGAACC
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-aggctccttgtgtgttttgagtgttgcatgactgtaaatatgtttctggagtttttttatttaaattttaata-tatctgttcatgctctgttttaaatagGTTCATATGGAGAGGTATACCATGCTGACTGGAATGGCACGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211271921|gb|FL194746.1|FL194746EST: GTGCGAAATTCCTTGGGAAGATCTTGTGATTGGTGAAAGGATTGGCTTAG GTTCATATGGAGAGATTTACTGTGCTGACTGGAATGGAACC
genomic: GTGCGAAATTCCTTGGGAAGATCTTGTGATTGGTGAAAGGATTGGCTTAGgtacttattt ... cgttcaatagGTTCATATGGAGAGATTTACTGTGCTGACTGGAATGGAACC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgcaccttcctgatctctgcatgaaaactattgattgatttgcttcgttcaatagGTTCATATGGAGAGATTTACTGTGCTGACTGGAATGGAACC
tttgcttc CT-rich tract
aaaactatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tatgctttttattggttgaataggagtgggttggttgcttgaacttgcaccttcctgatctctgcatgaaaactattgattgatttgcttcgttcaatagGTTCATATGGAGAGATTTACTGTGCTGACTGGAATGGAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA