1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tatgctttttattggttgaataggagtgggttggttgcttgaacttgcaccttcctgatctctgcatgaaaactattgattgatttgcttcgttcaatagGTTCATATGGAGAGATTTACTGTGCTGACTGGAATGGAACC
species | Zea mays |
transcript | GRMZM2G044180_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
tgcaccttcctgatctctgcatgaaaactattgattgatttgcttcgttcaatagGTTCATATGGAGAGATTTACTGTGCTGACTGGAATGGAACC
tttgcttc CT-rich tract
aaaactatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgctttttattggttgaataggagtgggttggttgcttgaacttgcaccttcctgatctctgcatgaaaactattgattgatttgcttcgttcaatagGTTCATATGGAGAGATTTACTGTGCTGACTGGAATGGAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
tatgctt
- - - - - -ttggttg
- - - - - - - - - - - - - - - - - -tgcttga
- - - - - - - - - - - - - - - - - - - - - acttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgctt