1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcttccttcttttttgggaatgacaagtgcttcaaatgatgagcactagtgcaccttattgatcgttatctgcgcaatggtttttattttaaaattgcagGACGATGTGTTCTTAATTTGCAGCAATGCGATGCAGTACAATGCACCTGATACAATTTACTTCAGACAG
species | Zea mays |
transcript | GRMZM2G044044_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAGGAAGAAGCCTTGCCAGGAATGCATATCGCTCGTTTGAGCAATTTGAG GACGATGTGTTCTTA
genomic: CAGGAAGAAGC-TTGCCAGGAATGCATATCGCTCGTTTGAGCAATTTGAGgtcagattga ... aaaattgcagGACGATGTGTTCTTA
ctagtgcaccttattgatcgttatctgcgcaatggtttttattttaaaattgcagGACGATGTGTTCTTAATTTGCAGCAATGCGATGCAGTACAATGCACCTGATACAATTTACTTCAGACAG
tattgat putative branch site (score: 75)
aatggtttttatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttccttcttttttgggaatgacaagtgcttcaaatgatgagcactagtgcaccttattgatcgttatctgcgcaatggtttttattttaaaattgcagGACGATGTGTTCTTAATTTGCAGCAATGCGATGCAGTACAATGCACCTGATACAATTTACTTCAGACAG
- - - - - - - - - - - - - gtgcttc
- - - - - - - - - - - - - - - - - -atgatga
- - - - - - - - - - - - - - - - - - - - - - - - gtgcacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgcgca