1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtatactagttctctgctctgtgagagacagtacgttgtttaatagtttttcctggtatttcatgattttggtgtttgtaatttcctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG
species | Zea mays |
transcript | GRMZM2G044027_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGACTTGCAAAGEST: gi|149089880|gb|EE179165.2|EE179165
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGEST: gi|148944203|gb|EC889294.2|EC889294
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGEST: gi|14206834|gb|BG840512.1|BG840512
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGEST: gi|148961007|gb|EE011707.2|EE011707
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGEST: gi|40334152|gb|CK368222.1|CK368222
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTGCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGEST: gi|32831707|gb|CD971385.1|CD971385
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTEST: gi|22473192|gb|BU037672.1|BU037672
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGT
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGACTTGCAAAGEST: gi|32909997|gb|CF014809.1|CF014809
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: ATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGEST: gi|6194647|gb|AW146751.1|AW146751
genomic: ATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGACTTGCAAAGEST: gi|211032180|gb|FL277400.1|FL277400
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGACTTGCAAAGEST: gi|148970766|gb|EE021510.2|EE021510
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGEST: gi|6020952|gb|AW065880.1|AW065880
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGACTTGCAAAGEST: gi|67016223|gb|CO444972.1|CO444972
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGACTTGCAAAGEST: gi|21987903|gb|BQ779431.1|BQ779431
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGACTTGCAAAGEST: gi|148930565|gb|EE285203.2|EE285203
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGEST: gi|26558105|gb|CA830340.1|CA830340
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGACTTGCAAAGEST: gi|32850126|gb|CD989807.1|CD989807
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: TGCTTGTCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGEST: gi|71442898|gb|DR823948.1|DR823948
genomic: TGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGEST: gi|211425100|gb|FK999871.1|FK999871
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCCTGA-CATGCTGGGACTTGCAAAEST: gi|149107237|gb|EE189120.2|EE189120
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCC-TGAACATGCTGGGCCTTGCAAA
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGEST: gi|211425097|gb|FK999868.1|FK999868
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGACTTGCAAAGEST: gi|15632416|gb|BI679509.1|BI679509
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGACTTGCAAAGEST: gi|149081449|gb|EE170575.2|EE170575
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGEST: gi|213173372|gb|FM186537.1|FM186537
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGEST: gi|211427693|gb|FK999880.1|FK999880
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTCAACATGCTGGGACTTGCAAAGEST: gi|40337515|gb|CK371585.1|CK371585
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGACTTGCAAAGEST: gi|148951041|gb|EC896695.2|EC896695
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGEST: gi|149066780|gb|EE286922.2|EE286922
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGEST: gi|148960534|gb|EE011139.2|EE011139
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGEST: gi|149089846|gb|EE179125.2|EE179125
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGEST: gi|149097834|gb|EE183762.2|EE183762
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGEST: gi|211425101|gb|FK999872.1|FK999872
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGEST: gi|149097829|gb|EE183756.2|EE183756
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGEST: gi|67013235|gb|CO441984.1|CO441984
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGACTTGCAAAGEST: gi|148945878|gb|EC891170.2|EC891170
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGEST: gi|148956701|gb|EC902571.2|EC902571
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGEST: gi|211427695|gb|FK999882.1|FK999882
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGACTTGCAAAGEST: gi|32165003|gb|CD670321.1|CD670321
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGEST: gi|6637013|gb|AW261285.1|AW261285
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
ttaatagtttttcctggtatttcatgattttggtgtttgtaatttcctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG
gtttaat putative branch site (score: 1002)
tttcctgt putative PPT
tatttcatgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatactagttctctgctctgtgagagacagtacgttgtttaatagtttttcctggtatttcatgattttggtgtttgtaatttcctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT