1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtccgtttcttgaccacccaccctgacaaggttcttgaggtgctttatgctttgattgaatgaattgaatcaaccatggttcagaggttgtgacatctgatcgaatcctgtagcagATACTCCTACCAAGATGAACAGTAACAGCCTTGCAATGAGTGGTGGGCCTGCAGCCGGTGCAGGAGGCGAGCACGAGGAGCAGCAGCAGGATGGGGACGG
species | Zea mays |
transcript | GRMZM2G044004_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGGGAATGACAATGCCGTCGCCTTCCATTTGGAGGATGCCAACATCCAAG ATACTCCTACCAAGATGAACAGTAACAGCCTTGCAATGAGTGGTGGGCCTGEST: gi|211185322|gb|FL304176.1|FL304176
genomic: CGGGAATGACAATGCCGTCGCCTTCCATTTGGAGGATGCCAACATCCAAGgtccgtttct ... cctgtagcagATACTCCTACCAAGATGAACAGTAACAGCCTTGCAATGAGTGGTGGGCCTG
EST: CGGGAATGACAATGCCGTCGCCTTCCATTTGGAGGATGCCAACATCCAAG ATACTCCTACCAAGATGAACAGTAACAGCCTTGCAATGAGTGGTGGGCCTGEST: gi|71440982|gb|DR822032.1|DR822032
genomic: CGGGAATGACAATGCCGTCGCCTTCCATTTGGAGGATGCCAACATCCAAGgtccgtttct ... cctgtagcagATACTCCTACCAAGATGAACAGTAACAGCCTTGCAATGAGTGGTGGGCCTG
EST: CGGGAATGACAATGCCGTCGCCTTCCATTTGGAGGATGCCAACATCCAAG ATACTCCTACCAAGATGAACAGTAACAGCCTTGCAATGAGTGGTGGGCCTGEST: gi|50328106|gb|CO523232.1|CO523232
genomic: CGGGAATGACAATGCCGTCGCCTTCCATTTGGAGGATGCCAACATCCAAGgtccgtttct ... cctgtagcagATACTCCTACCAAGATGAACAGTAACAGCCTTGCAATGAGTGGTGGGCCTG
EST: CGGGAATGACAATGCCGTCGCCTTCCATTTGGAGGATGCCAACATCCAAG ATACTCCTACCAAGATGAACAGTAACAGCCTTGCAATGAGTGGTGGGCCTGEST: gi|211185318|gb|FL304172.1|FL304172
genomic: CGGGAATGACAATGCCGTCGCCTTCCATTTGGAGGATGCCAACATCCAAGgtccgtttct ... cctgtagcagATACTCCTACCAAGATGAACAGTAACAGCCTTGCAATGAGTGGTGGGCCTG
EST: CGGGAATGACAATGCCGTCGCCTTCCATTTGGAGGATGCCAACATCCAAG ATACTCCTACCAAGATGAACAGTAACAGCCTTGCAATGAGTGGTGGGCCTGEST: gi|211185320|gb|FL304174.1|FL304174
genomic: CGGGAATGACAATGCCGTCGCCTTCCATTTGGAGGATGCCAACATCCAAGgtccgtttct ... cctgtagcagATACTCCTACCAAGATGAACAGTAACAGCCTTGCAATGAGTGGTGGGCCTG
EST: CGGGAATGACAATGCCGTCGCCTTCCATTTGGAGGATGCCAACATCCAAG ATACTCCTACCAAGATGAACAGTAACAGCCTTGCAATGAGTGGTGGGCCTGEST: gi|91048835|gb|EB159253.1|EB159253
genomic: CGGGAATGACAATGCCGTCGCCTTCCATTTGGAGGATGCCAACATCCAAGgtccgtttct ... cctgtagcagATACTCCTACCAAGATGAACAGTAACAGCCTTGCAATGAGTGGTGGGCCTG
EST: CGGGAATGACAATGCCGTCGCCTTCCATTTGGAGGATGCCAACATCCAAG ATACTCCTACCAAGATGAACAGTAACAGCCTTGCAATGAGTGGTGGGCCTGEST: gi|211185319|gb|FL304173.1|FL304173
genomic: CGGGAATGACAATGCCGTCGCCTTCCATTTGGAGGATGCCAACATCCAAGgtccgtttct ... cctgtagcagATACTCCTACCAAGATGAACAGTAACAGCCTTGCAATGAGTGGTGGGCCTG
EST: CGGGAATGACAATGCCGTCGCCTTCCATTTGGAGGATGCCAACATCCAAG ATACTCCTACCAAGATGAACAGTAACAGCCTTGCAATGAGTGGTGGGCCTGEST: gi|211185321|gb|FL304175.1|FL304175
genomic: CGGGAATGACAATGCCGTCGCCTTCCATTTGGAGGATGCCAACATCCAAGgtccgtttct ... cctgtagcagATACTCCTACCAAGATGAACAGTAACAGCCTTGCAATGAGTGGTGGGCCTG
EST: CGGGAATGACAATGCCGTCGCCTTCCATTTGGAGGATGCCAACATCCAAG ATACTCCTACCAAGATGAACAGTAACAGCCTTGCAATGAGTGGTGGGCCTG
genomic: CGGGAATGACAATGCCGTCGCCTTCCATTTGGAGGATGCCAACATCCAAGgtccgtttct ... cctgtagcagATACTCCTACCAAGATGAACAGTAACAGCCTTGCAATGAGTGGTGGGCCTG
gaattgaatcaaccatggttcagaggttgtgacatctgatcgaatcctgtagcagATACTCCTACCAAGATGAACAGTAACAGCCTTGCAATGAGTGGTGGGCCTGCAGCCGGTGCAGGAGGCGAGCACGAGGAGCAGCAGCAGGATGGGGACGG
atctgat putative branch site (score: 29)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccgtttcttgaccacccaccctgacaaggttcttgaggtgctttatgctttgattgaatgaattgaatcaaccatggttcagaggttgtgacatctgatcgaatcctgtagcagATACTCCTACCAAGATGAACAGTAACAGCCTTGCAATGAGTGGTGGGCCTGCAGCCGGTGCAGGAGGCGAGCACGAGGAGCAGCAGCAGGATGGGGACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG