1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gatgtccatttcctatatgttattagtttggcttattctggctataaagattgatggccattatttaagctttttctgacaatgaaaccgtacttttcagAGTGTTACTCCGAACCTATCAATGGGAACTGAAATGTTCTGGCTTGGTCACCAAAGGAAGTCTGGAATTGGTTTTGCCTGTCGCTATAACACGGACAAAA
species | Zea mays |
transcript | GRMZM2G043983_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CACAATTCCAAATAGGGAACAATGCATTCTATGGTGCAAATTATATTCAG AGTGTTACTCCGAACCTATCAATGGGAACTGAAATGTTCTGGCTTGGTCACEST: gi|76280767|gb|DV020335.1|DV020335
genomic: CACAATTCCAAATAGGGAACAATGCATTCTATGGTGCAAATTATATTCAGgtaaaaactt ... tacttttcagAGTGTTACTCCGAACCTATCAATGGGAACTGAAATGTTCTGGCTTGGTCAC
EST: GGGAACAATGCATTCTATGGTGCAAATTATATTCAG AGTGTTACTCCGAACCTATCAATGGGAACTGAAATGTTCTGGCTTGGTCACEST: gi|113702734|gb|EE680238.1|EE680238
genomic: GGGAACAATGCATTCTATGGTGCAAATTATATTCAGgtaaaaactt ... tacttttcagAGTGTTACTCCGAACCTATCAATGGGAACTGAAATGTTCTGGCTTGGTCAC
EST: TGGTGCAAATTATATTCAG AGTGTTACTCCGAACCTATCAATGGGAACTGAAATGTTCTGGCTTGGTCACEST: gi|6101993|gb|AW126463.1|AW126463
genomic: TGGTGCAAATTATATTCAGgtaaaaactt ... tacttttcagAGTGTTACTCCGAACCTATCAATGGGAACTGAAATGTTCTGGCTTGGTCAC
EST: CACAATTCCAAATAGGGAACAATGCATTCTATGGTGCAAATTATATTCAG AGTGTTACTCCGAACCTATCAATGGGAACTGAAAGGTTCTGGCTTGGTCACEST: gi|76016907|gb|DT944077.1|DT944077
genomic: CACAATTCCAAATAGGGAACAATGCATTCTATGGTGCAAATTATATTCAGgtaaaaactt ... tacttttcagAGTGTTACTCCGAACCTATCAATGGGAACTGAAATGTTCTGGCTTGGTCAC
EST: CACAATTCCAAATAGGGAACAATGCATTCTATGGTGCAAATTATATTCAG AGTGTTACTCCGAACCTATCAATGGGAACTGAAATGTTCTGGCTTGGTCAC
genomic: CACAATTCCAAATAGGGAACAATGCATTCTATGGTGCAAATTATATTCAGgtaaaaactt ... tacttttcagAGTGTTACTCCGAACCTATCAATGGGAACTGAAATGTTCTGGCTTGGTCAC
aaagattgatggccattatttaagctttttctgacaatgaaaccgtacttttcagAGTGTTACTCCGAACCTATCAATGGGAACTGAAATGTTCTGGCTTGGTCACCAAAGGAAGTCTGGAATTGGTTTTGCCTGTCGCTATAACACGGACAAAA
ttctgac putative branch site (score: 80)
tacttttc putative PPT
attatttaagcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgtccatttcctatatgttattagtttggcttattctggctataaagattgatggccattatttaagctttttctgacaatgaaaccgtacttttcagAGTGTTACTCCGAACCTATCAATGGGAACTGAAATGTTCTGGCTTGGTCACCAAAGGAAGTCTGGAATTGGTTTTGCCTGTCGCTATAACACGGACAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA