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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatttttgctgttgattaacggcgggatgagcgttctaatttgctatgctgcttgtttggtttgacggtctttaccgtaaagtatgatttgacgtagccgaacacatcttctctttgttgtttgttattactagGCTTCCGGATTTGGGCACCACCCGAAGCTTTCTTCGACCGGCGTGCTCCCTCCGCCACATGATCGGATTGCTTACGGGACGACGGGAAATCCCGGTGATG

Basic information

species Zea mays
transcript GRMZM2G043470_T02
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76926179|gb|DV170750.1|DV170750
EST:     GAGCTGGAGCAGAGGGGCTTGGGGGCTGGACTGACNNNNNNNCACCCGAT                         GCTTCCGGATTTGGGCACCACCCGAAGCTTTTTTCGACCGGCGTGCTCCCT
genomic: GAGCTGGAGCAGAGGGGCTTGGGGGCTGGACTGACTTTTTTTCACCCGATgtaaattttt ... ttattactagGCTTCCGGATTTGGGCACCACCCGAAGCTTTCTTCGACCGGCGTGCTCCCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtatgatttgacgtagccgaacacatcttctctttgttgtttgttattactagGCTTCCGGATTTGGGCACCACCCGAAGCTTTCTTCGACCGGCGTGCTCCCTCCGCCACATGATCGGATTGCTTACGGGACGACGGGAAATCCCGGTGATG
       atttgac  putative branch site (score: 4)
                                         tttgttatta  TA-rich tract