1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gtggtacatacctgtcattttttgggggttctcttgagttgtgaatgccttttttatttagctaattagctttatatttctcaaaattatgatgttacagGGTTGACCTGTGTCATCAGACAAATGATGAAGACGAAGAAGATGGAAGGAGTCAGAGTCACCATGAAGCTTTACTAGACAGAACAAAAGCGAAACCTGGC
species | Zea mays |
transcript | GRMZM2G042099_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGTCCACAGATATTGCTTCTTGCTTCTTTCCTCTTGCTACTGTCATTCTG GGTTGACCTGTGTCATCAGACAAATGATGAAGACGAAGAAGATGGAAGGAGEST: gi|211469288|gb|FL298421.1|FL298421
genomic: AGTCCACAGATATTGCTTCTTGCTTCTTTCCTCTTGCTACTGTCATTCTGgtaatttact ... gatgttacagGGTTGACCTGTGTCATCAGACAAATGATGAAGACGAAGAAGATGGAAGGAG
EST: AGTCCACAGATATTGCTTCTTGCTTCTTTCCTCTTGCTACTGTCATTCTG GGTTGACCTGTGTCATCAGACAAATGATGAAGACGAAGAAGATGGAAGGAGEST: gi|78122118|gb|DV540502.1|DV540502
genomic: AGTCCACAGATATTGCTTCTTGCTTCTTTCCTCTTGCTACTGTCATTCTGgtaatttact ... gatgttacagGGTTGACCTGTGTCATCAGACAAATGATGAAGACGAAGAAGATGGAAGGAG
EST: AGTCCACAGATATTGCTTCTTGCTTCTTTCCTCTTGCTACTGTCATTCTG GGTTGACCTGTGTCATCAGACAAATGATGAAGACGAAGAAGATGGAAGGAG
genomic: AGTCCACAGATATTGCTTCTTGCTTCTTTCCTCTTGCTACTGTCATTCTGgtaatttact ... gatgttacagGGTTGACCTGTGTCATCAGACAAATGATGAAGACGAAGAAGATGGAAGGAG
tgccttttttatttagctaattagctttatatttctcaaaattatgatgttacagGGTTGACCTGTGTCATCAGACAAATGATGAAGACGAAGAAGATGGAAGGAGTCAGAGTCACCATGAAGCTTTACTAGACAGAACAAAAGCGAAACCTGGC
agctaat putative branch site (score: 158)
tttttatttagctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggtacatacctgtcattttttgggggttctcttgagttgtgaatgccttttttatttagctaattagctttatatttctcaaaattatgatgttacagGGTTGACCTGTGTCATCAGACAAATGATGAAGACGAAGAAGATGGAAGGAGTCAGAGTCACCATGAAGCTTTACTAGACAGAACAAAAGCGAAACCTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - catacct