1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagtatcaactccacaactccctctccccccctcgtatcaccatgagttcatgtatctacatgagtctcacgaatctgtttctttggcagCCACTCCTCGCGATTGATGTTTGGGAG
species | Zea mays |
transcript | GRMZM2G042080_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGATCTCAAAGACTCCAAATGCCATCAACCCTCTTGTCTGGGGCCACTCT CCACTCCTCGCGATTGATGTTTGGGAGEST: gi|148935524|gb|EC879565.2|EC879565
genomic: TGATCTCAAAGACTCCAAATGCCATCAACCCTCTTGTCTGGGGCCACTCTgtgagtatca ... tctttggcagCCACTCCTCGCGATTGATGTTTGGGAG
EST: GCCATCAACCCTCTTGTCTGGGGCCACTCT CCACTCCTCGCGATTGATGTTTGGGAGEST: gi|78026637|gb|DV495024.1|DV495024
genomic: GCCATCAACCCTCTTGTCTGGGGCCACTCTgtgagtatca ... tctttggcagCCACTCCTCGCGATTGATGTTTGGGAG
EST: TGATCTCAAAGACTCCAAATGCCATCAACCCTCTTGTCTGGGGCCACTCT CCACTCCTCGCGATTGATGTTTGGGAG
genomic: TGATCTCAAAGACTCCAAATGCCATCAACCCTCTTGTCTGGGGCCACTCTgtgagtatca ... tctttggcagCCACTCCTCGCGATTGATGTTTGGGAG
tatcaccatgagttcatgtatctacatgagtctcacgaatctgtttctttggcagCCACTCCTCGCGATTGATGTTTGGGAG
gtctcac putative branch site (score: 26)
tctgtttcttt putative PPT
tttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtatcaactccacaactccctctccccccctcgtatcaccatgagttcatgtatctacatgagtctcacgaatctgtttctttggcagCCACTCCTCGCGATTGATGTTTGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC