1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagttagacaaggcttattatttgagattgctatttgtgccatgtaattttcattttatagcaccagcacattttttattttacattaccagaatgttattttttgtattctctgtgaattctttgtgcctacgacagcatatattcattaatactgatcatatagtgcaattgctacagACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTACAGAG
species | Zea mays |
transcript | GRMZM2G042027_T05 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAAAATTACTGGAAACCCTTCCTGAAAATCTGAGTGCAGTTGCCCATTTT ACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTACAEST: gi|71436673|gb|DR817723.1|DR817723
genomic: GAAAATTACTGGAAACCCTTCCTGAAAATCTGAGTGCAGTTGCCCATTTTgtaagttaga ... attgctacagACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTACA
EST: GAAAATTACTGGAAACCCTTCCTGAAAATCTGAGTGCAGTTGCCCATTTT ACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTACAEST: gi|71302083|gb|DR787129.1|DR787129
genomic: GAAAATTACTGGAAACCCTTCCTGAAAATCTGAGTGCAGTTGCCCATTTTgtaagttaga ... attgctacagACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTACA
EST: GAAAATTACTGGAAACCCTTCCTGAAAATCTGAGTGCAGTTGCCCATTTT ACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTACAEST: gi|76011416|gb|DT938586.1|DT938586
genomic: GAAAATTACTGGAAACCCTTCCTGAAAATCTGAGTGCAGTTGCCCATTTTgtaagttaga ... attgctacagACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTACA
EST: AAATCTGAGTGCAG-TGCCCCATTTT ACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTACEST: gi|50325364|gb|CO520490.1|CO520490
genomic: AAATCTGAGTGCAGTTG-CCCATTTTgtaagttaga ... attgctacagACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTAC
EST: GAAAATTACTGGAAACCCTTCCTGAAAATCTGAGTGCAGTTGCCCATTTT ACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTACAEST: gi|60342707|gb|DN209680.1|DN209680
genomic: GAAAATTACTGGAAACCCTTCCTGAAAATCTGAGTGCAGTTGCCCATTTTgtaagttaga ... attgctacagACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTACA
EST: GAAAATTACTGGAAACCCTTCCTGAAAATCTGAGTGCAGTTGCCCATTTT ACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTACAEST: gi|91054196|gb|EB164614.1|EB164614
genomic: GAAAATTACTGGAAACCCTTCCTGAAAATCTGAGTGCAGTTGCCCATTTTgtaagttaga ... attgctacagACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTACA
EST: GAAAATTACTGGAAACCCTTCCTGAAAATCTGAGTGCAGTTGCCCATTTT ACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTACAEST: gi|67018887|gb|CO447636.1|CO447636
genomic: GAAAATTACTGGAAACCCTTCCTGAAAATCTGAGTGCAGTTGCCCATTTTgtaagttaga ... attgctacagACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTACA
EST: CCTTCCTTAAAATCTGAGTGCAGTTGCCCATTTT ACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTACAEST: gi|78083391|gb|DV511784.1|DV511784
genomic: CCTTCCTGAAAATCTGAGTGCAGTTGCCCATTTTgtaagttaga ... attgctacagACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTACA
EST: GAAAATTACTGGAAACCCTTCCTGAAAATCTGAGTGCAGTTGCCCATTTT ACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTACA
genomic: GAAAATTACTGGAAACCCTTCCTGAAAATCTGAGTGCAGTTGCCCATTTTgtaagttaga ... attgctacagACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTACA
gtgcctacgacagcatatattcattaatactgatcatatagtgcaattgctacagACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTACAGAG
tactgat putative branch site (score: 46)
atatattcattaatac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttagacaaggcttattatttgagattgctatttgtgccatgtaattttcattttatagcaccagcacattttttattttacattaccagaatgttattttttgtattctctgtgaattctttgtgcctacgacagcatatattcattaatactgatcatatagtgcaattgctacagACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTACAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT