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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttagctttattcctttgaccctttttttcctgtattatgatgcaaccttatctcagtaactcttgcaattcctatttgtgatgctaatctcgcatgacactatagGGCCCTGGATGATTCAAGTGTTCAATTAGATAATGGTATCTCTGCTTTGCAG

Basic information

species Zea mays
transcript GRMZM2G041701_T01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211090511|gb|FK961028.1|FK961028
EST:     AATAGAGAAGACACTTAAGAATAGAATCCGTTGGAA                         GGCCCTGGATGATTCAAGTGTTCAATTAGATAATGGTATCTCTGCTTTGCA
genomic: AATAGAGAAGACACTTAAGAATAGAATCCGTTGGAAgtaagcttag ... gacactatagGGCCCTGGATGATTCAAGTGTTCAATTAGATAATGGTATCTCTGCTTTGCA
EST: gi|211090513|gb|FK961030.1|FK961030
EST:     AATAGAGAAGACACTTAAGAATAGAATCCGTTGGAA                         GGCCCTGGATGATTCAAGTGTTCAATTAGATAATGGTATCTCTGCTTTGCA
genomic: AATAGAGAAGACACTTAAGAATAGAATCCGTTGGAAgtaagcttag ... gacactatagGGCCCTGGATGATTCAAGTGTTCAATTAGATAATGGTATCTCTGCTTTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcagtaactcttgcaattcctatttgtgatgctaatctcgcatgacactatagGGCCCTGGATGATTCAAGTGTTCAATTAGATAATGGTATCTCTGCTTTGCAG
                               tgctaat  putative branch site (score: 2)
                      tatttgt  TA-rich tract