1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cggtcgtgctcttctgactggagggagtagatgagttgcacagattagactgctgctaattccttcgcccgtcttgatgtcatgtttctccctcgaccagCCAACACTGGAAGCATTGATTGAGTCAGGGTACTCGCTGGTGAAGGAGCAGGAACTAATAATGAGCTCCAAGCTTTCAAAAGAGTATATGAAGAACTTAG
species | Zea mays |
transcript | GRMZM2G039345_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTCTTAAGCGAAAGAAAGGCGAGGAGCTTCCAACGTTTATACCCCCAAAG CCAACACTGGAAGCATTGATTGAGTCAGGGTACTCGCTGGTGAAGGAGCAGEST: gi|94472576|gb|EB701534.1|EB701534
genomic: TTCTTAAGCGAAAGAAAGGCGAGGAGCTTCCAACGTTTATACCCCCAAAGgtattcgata ... cctcgaccagCCAACACTGGAAGCATTGATTGAGTCAGGGTACTCGCTGGTGAAGGAGCAG
EST: TTCTTAAGCGAAAGAAAGGCGAGGAGCTTCCAACGTTTATACCCCCAAAG CCAACACTGGAAGCATTGATTGAGTCAGGGTACTCGCTGGTGAAGGAGCAGEST: gi|13558637|gb|BG549993.1|BG549993
genomic: TTCTTAAGCGAAAGAAAGGCGAGGAGCTTCCAACGTTTATACCCCCAAAGgtattcgata ... cctcgaccagCCAACACTGGAAGCATTGATTGAGTCAGGGTACTCGCTGGTGAAGGAGCAG
EST: GTTTATACCCCCAAAG CCAACACTGGAAGCATTGATTGAGTCAGGGTACTCGCTGGNTGAAGGAGCAEST: gi|13558280|gb|BG549636.1|BG549636
genomic: GTTTATACCCCCAAAGgtattcgata ... cctcgaccagCCAACACTGGAAGCATTGATTGAGTCAGGGTACTCGCTGG-TGAAGGAGCA
EST: TTCTTAAGCGAAAGAAAGGCGAGGAGCTTCCAACGTTTATACCCCCAAAG CCAACACTGGAAGCATTGATTGAGTCAGGGTACTCGCTGGTGAAGGAGCAGEST: gi|149110162|gb|EE293978.2|EE293978
genomic: TTCTTAAGCGAAAGAAAGGCGAGGAGCTTCCAACGTTTATACCCCCAAAGgtattcgata ... cctcgaccagCCAACACTGGAAGCATTGATTGAGTCAGGGTACTCGCTGGTGAAGGAGCAG
EST: TTCTTAAGCGAAAGAAAGGCGAGGAGCTTCCAACGTTTATACCCCCAAAG CCAACACTGGAAGCATTGATTGAGTCAGGGTACTCGCTGGTGAAGGAGCAGEST: gi|10450869|gb|BE924793.1|BE924793
genomic: TTCTTAAGCGAAAGAAAGGCGAGGAGCTTCCAACGTTTATACCCCCAAAGgtattcgata ... cctcgaccagCCAACACTGGAAGCATTGATTGAGTCAGGGTACTCGCTGGTGAAGGAGCAG
EST: TTCTTAAGCGAAAGAAAGGCGAGGAGCTTCCAACGTTTATACCCCCAAAG CCAACACTGGAAGCATTGATTGAGTCAGGGTACTCGCTGGTGAAGGAGCAGEST: gi|50339743|gb|CO534869.1|CO534869
genomic: TTCTTAAGCGAAAGAAAGGCGAGGAGCTTCCAACGTTTATACCCCCAAAGgtattcgata ... cctcgaccagCCAACACTGGAAGCATTGATTGAGTCAGGGTACTCGCTGGTGAAGGAGCAG
EST: TTCTTAAGCGAAAGAAAGGCGAGGAGCTTCCAACGTTTATACCCCCAAAG CCAACACTGGAAGCATTGATTGAGTCAGGGTACTCGCTGGTGAAGGAGCAGEST: gi|50324671|gb|CO519797.1|CO519797
genomic: TTCTTAAGCGAAAGAAAGGCGAGGAGCTTCCAACGTTTATACCCCCAAAGgtattcgata ... cctcgaccagCCAACACTGGAAGCATTGATTGAGTCAGGGTACTCGCTGGTGAAGGAGCAG
EST: TTCTTAAGCGAAAGAAAGGCGAGGAGCTTCCAACGTTTATACCCCCAAAG CCAACACTGGAAGCATTGATTGAGTCAGGGTACTCGCTGGTGAAGGAGCAG
genomic: TTCTTAAGCGAAAGAAAGGCGAGGAGCTTCCAACGTTTATACCCCCAAAGgtattcgata ... cctcgaccagCCAACACTGGAAGCATTGATTGAGTCAGGGTACTCGCTGGTGAAGGAGCAG
tagactgctgctaattccttcgcccgtcttgatgtcatgtttctccctcgaccagCCAACACTGGAAGCATTGATTGAGTCAGGGTACTCGCTGGTGAAGGAGCAGGAACTAATAATGAGCTCCAAGCTTTCAAAAGAGTATATGAAGAACTTAG
tcatgtttctccctc CT-rich tract
taatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cggtcgtgctcttctgactggagggagtagatgagttgcacagattagactgctgctaattccttcgcccgtcttgatgtcatgtttctccctcgaccagCCAACACTGGAAGCATTGATTGAGTCAGGGTACTCGCTGGTGAAGGAGCAGGAACTAATAATGAGCTCCAAGCTTTCAAAAGAGTATATGAAGAACTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - cgtgctc
- - - - - - - tgactgg
- - - - - - - - - - - - - - - - - gttgcac
- - - - - - - - - - - - - - - - - - - - - - - - actgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttct