1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagtgggtgcatgcagtttattccctatcatgagaagacaatagacaacaacttggcattccaattgaattagtttagtgctaattgattgatttgtttgcactgcagGAAGAAAATAAAATCTTAGATAAGCTGCATCGCCAAAAGATTGCAGAAGTTGAAAAGCTTAGCCAAACTGTGAGGGAGTTGGAAGAAGCTGTTCTTCAAG
species | Zea mays |
transcript | GRMZM2G039325_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATTTGCAAAACAAGAACCAAGAGTTGATCAAGCAAATTGAGATCTGCCAT GAAGAAAATAAAATCTTAGATAAGCTGGCATCGCCAAAAGATTGCAGAAGTEST: gi|211166804|gb|FK981058.1|FK981058
genomic: ATTTGCAAAACAAGAACCAAGAGTTGATCAAGCAAATTGAGATCTGCCATgtaagtgggt ... tgcactgcagGAAGAAAATAAAATCTTAGATAAGCT-GCATCGCCAAAAGATTGCAGAAGT
EST: AAGCAAATTGAGATCTGCCAT GAAGAAAATAAAATCTTAGATAAGCTGCATCGCCAAAAGATTGCAGAAGTTEST: gi|13381901|gb|BG458576.1|BG458576
genomic: AAGCAAATTGAGATCTGCCATgtaagtgggt ... tgcactgcagGAAGAAAATAAAATCTTAGATAAGCTGCATCGCCAAAAGATTGCAGAAGTT
EST: ATTTGCAAAACAAGAACCAAGAGTTGATCAAGCAAATTGAGATCTGCCAT GAAGAAAATAAAATCTTAGATAAGCTGCATCGCCAAAAGATTGCAGAAGTT
genomic: ATTTGCAAAACAAGAACCAAGAGTTGATCAAGCAAATTGAGATCTGCCATgtaagtgggt ... tgcactgcagGAAGAAAATAAAATCTTAGATAAGCTGCATCGCCAAAAGATTGCAGAAGTT
tggcattccaattgaattagtttagtgctaattgattgatttgtttgcactgcagGAAGAAAATAAAATCTTAGATAAGCTGCATCGCCAAAAGATTGCAGAAGTTGAAAAGCTTAGCCAAACTGTGAGGGAGTTGGAAGAAGCTGTTCTTCAAG
tttgttt CT-rich tract
aattgaattagttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgggtgcatgcagtttattccctatcatgagaagacaatagacaacaacttggcattccaattgaattagtttagtgctaattgattgatttgtttgcactgcagGAAGAAAATAAAATCTTAGATAAGCTGCATCGCCAAAAGATTGCAGAAGTTGAAAAGCTTAGCCAAACTGTGAGGGAGTTGGAAGAAGCTGTTCTTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT