1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaatcatccgccacacatctcatccatgatccatcgttctgtagcttgtgtcatgagccatggatctcagtttgtgttaatacacacagCTGCTACGACAAGCTGGTCCTGCTGGAGCTGCCACCAGGCCTGGATGTAAGAACTAGGAGTTGCAGGAAAACGGAGTATGACCCAAGAAGATACCTCACT
species | Zea mays |
transcript | GRMZM2G039246_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGAAGAGGGAGCACGGTGCCCTGAGGCAGAAACTAGAGGCCTATTTCCAG CTGCTACGACAAGCTGGTCCTGCTGGAGCTGCCACCAGGCCTGGATGTAAGEST: gi|211497971|gb|FL450091.1|FL450091
genomic: TGAAGAGGGAGCACGGTGCCCTGAGGCAGAAACTAGAGGCCTATTTCCAGgtaatcatcc ... atacacacagCTGCTACGACAAGCTGGTCCTGCTGGAGCTGCCACCAGGCCTGGATGTAAG
EST: TGAAGAGGGAGCACGGTGCCCTGAGGCAGAAACTAGAGGCCTATTTCCAG CTGCTACGACAAGCTGGTCCTGCTGGAGCTGCCACCAGGCCTGGATGTAAGEST: gi|211089936|gb|FL388086.1|FL388086
genomic: TGAAGAGGGAGCACGGTGCCCTGAGGCAGAAACTAGAGGCCTATTTCCAGgtaatcatcc ... atacacacagCTGCTACGACAAGCTGGTCCTGCTGGAGCTGCCACCAGGCCTGGATGTAAG
EST: TGAAGAGGGAGCACGGTGCCCTGAGGCAGATACTAGAGGCCTATTTCCAG CTGCTACGACAAGCTGGTCCTGCTGGAGCTGCCACCAGGCCTGGATGTAAGEST: gi|211074435|gb|FL412179.1|FL412179
genomic: TGAAGAGGGAGCACGGTGCCCTGAGGCAGAAACTAGAGGCCTATTTCCAGgtaatcatcc ... atacacacagCTGCTACGACAAGCTGGTCCTGCTGGAGCTGCCACCAGGCCTGGATGTAAG
EST: TGAAGAGGGAGCACGGTGCCCTGAGGCAGAAACTAGAGGCCTATTTCCAG CTGCTACGACAAGCTGGTCCTGCTGGAGCTGCCAC-AGGCCTGGATGTAAGEST: gi|88752159|gb|DY536300.1|DY536300
genomic: TGAAGAGGGAGCACGGTGCCCTGAGGCAGAAACTAGAGGCCTATTTCCAGgtaatcatcc ... atacacacagCTGCTACGACAAGCTGGTCCTGCTGGAGCTGCCACCAGGCCTGGATGTAAG
EST: TGAAGAGGGAGCACGGTGCCCTGAGGCAGAAACTAGAGGCCTATTTCCAG CTGCTACGACAAGCTGGTCCTGCTGGAGCTGCCACCAGGCCTGGATGTAAG
genomic: TGAAGAGGGAGCACGGTGCCCTGAGGCAGAAACTAGAGGCCTATTTCCAGgtaatcatcc ... atacacacagCTGCTACGACAAGCTGGTCCTGCTGGAGCTGCCACCAGGCCTGGATGTAAG
cgttctgtagcttgtgtcatgagccatggatctcagtttgtgttaatacacacagCTGCTACGACAAGCTGGTCCTGCTGGAGCTGCCACCAGGCCTGGATGTAAGAACTAGGAGTTGCAGGAAAACGGAGTATGACCCAAGAAGATACCTCACT
tgttaat putative branch site (score: 6)
tgttaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatcatccgccacacatctcatccatgatccatcgttctgtagcttgtgtcatgagccatggatctcagtttgtgttaatacacacagCTGCTACGACAAGCTGGTCCTGCTGGAGCTGCCACCAGGCCTGGATGTAAGAACTAGGAGTTGCAGGAAAACGGAGTATGACCCAAGAAGATACCTCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG